Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23b04
         (954 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    30   0.42 
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch...    28   2.2  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   6.8  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    26   9.0  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   9.0  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   9.0  

>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +1

Query: 100 YVNYEKAVRVHVDVKYKTTYEQACINISKE---NRVKHGDPLYLSPQTILLDKIGVIQLF 270
           +V+  + ++ ++    + TY +A + I+K    N+V+H   LYL  Q IL D +  +   
Sbjct: 205 WVSILRRLQSNISTSERITYTKAILAIAKHHCWNKVEHSALLYLEHQLILYDTLTFVVHL 264

Query: 271 MRSK 282
           +  K
Sbjct: 265 LSQK 268


>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
           Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +1

Query: 64  KFVAKDIARSLKYVNYEKAVRVHVDVKYKTTYEQAC-INISKENRVKHGDPLYLSPQTIL 240
           +F+  D+ + +  ++   A  +   +  K TY+    +N     R+ H D   L PQ +L
Sbjct: 85  EFLDMDLKKYMDRISETGATSLDPRLVQKFTYQLVNGVNFCHSRRIIHRD---LKPQNLL 141

Query: 241 LDKIGVIQL 267
           +DK G ++L
Sbjct: 142 IDKEGNLKL 150


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 692 CEQWGKHDSSARLMCSKSVQ*TSPLLRYGLNSCFISFS-SSVWCTVGSVCST 540
           CE +G +   A +   K VQ     L+YGL + F+S + + ++  VG +C T
Sbjct: 155 CEIFGLY--VAFIYLEKGVQVLCDQLKYGLTNTFLSITIALLFLMVGWLCDT 204


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +1

Query: 49   DEQPVKFVAKDIARSLKYVNYEKAVRVHVDVKYKT---TYEQACINISKENRVKHGDPLY 219
            +EQ V+FV++ +   L Y+ + K + +H D+K       ++  C  IS     KH D +Y
Sbjct: 928  EEQLVRFVSRQVLYGLSYL-HSKGI-IHRDLKADNLLIDFDGVC-KISDFGISKHSDNVY 984


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 60  GQVCGQGHCPQFKICKL*KGSTC 128
           G+ C    C   K CKL KGS C
Sbjct: 332 GEDCENNPCCDGKTCKLTKGSLC 354


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 951  SNVDLYLPWTGHVLP 907
            SN+ LYLPW G+  P
Sbjct: 2284 SNIGLYLPWAGYSGP 2298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,472,529
Number of Sequences: 5004
Number of extensions: 67382
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)