Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23b04
         (954 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0183 - 21406474-21406636,21407412-21407956                       31   1.0  
04_03_0147 - 11853940-11854128,11854933-11855013,11855501-118555...    30   2.4  
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939...    29   7.2  
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696...    29   7.2  
10_06_0161 + 11344712-11344877,11345870-11346084                       28   9.5  

>09_06_0183 - 21406474-21406636,21407412-21407956
          Length = 235

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 243 RQNRRYTAVHALQDAQRGGAAKLVLRTRVAPVHRVGVEPAPRRPS 377
           R+N R +   A Q  +RG   +   R+    +HRVG E  P RPS
Sbjct: 60  RENERSSGKKAAQRERRGAYRRP--RSTTVGIHRVGAEATPPRPS 102


>04_03_0147 -
           11853940-11854128,11854933-11855013,11855501-11855584,
           11855663-11855735,11855888-11855949,11856246-11856327,
           11857643-11858262
          Length = 396

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +3

Query: 261 TAVHALQDAQRGGAAKLVLRTRVAPVHRVGVEPAPRRPSDGKV*FRSRRG 410
           TA   L++  RGGA +   R   A +H  G +P  R  +DG    R R G
Sbjct: 89  TADRELEELARGGARERAERWAAAHLHGGGGDPRDRALADGNPDGRGRAG 138


>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
            16794787-16796964,16797065-16797322,16799815-16800172
          Length = 1530

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 831  TCSVMNSQSNLWPXTSPAXXICKCERAIRVPSTAST 938
            T S+ NS S+  P TSP   + KC  A    ++A T
Sbjct: 1079 TTSIFNSASSSTPPTSPTPVLAKCSWACSNSASAYT 1114


>09_04_0308 +
           16567361-16568854,16568946-16569068,16569372-16569649,
           16570316-16571924,16572363-16573781
          Length = 1640

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 831 TCSVMNSQSNLWPXTSPAXXICKCERAIRVPSTAST 938
           T S+ NS S+  P TSP   + KC  A    ++A T
Sbjct: 646 TTSIFNSASSSTPPTSPTPVLAKCSWACSNSASAYT 681


>10_06_0161 + 11344712-11344877,11345870-11346084
          Length = 126

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 18/38 (47%), Positives = 23/38 (60%)
 Frame = -3

Query: 373 GRLGAGSTPTRCTGATRVRKTNFAAPPRCASWSA*TAV 260
           GR GAGS   RC G   +R+ ++AA    A W+A TAV
Sbjct: 6   GRAGAGSGDWRCAG--WLRRADWAASR--AGWAALTAV 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,505,163
Number of Sequences: 37544
Number of extensions: 471994
Number of successful extensions: 1245
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)