Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23a24
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0176 + 15432092-15432470,15432592-15432688,15432801-154329...   136   2e-32
01_01_1144 - 9066832-9066935,9067968-9068169,9068265-9068414,906...    35   0.054
01_01_0611 + 4541505-4541646,4543503-4543621,4543728-4543866,454...    31   1.2  
03_05_0071 - 20491521-20492813                                         28   6.2  
04_03_0241 - 13243938-13244453,13244538-13246334                       28   8.3  
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634...    28   8.3  

>10_08_0176 +
           15432092-15432470,15432592-15432688,15432801-15432985,
           15433012-15433056,15433447-15433472,15435299-15435434,
           15435608-15435702
          Length = 320

 Score =  136 bits (329), Expect = 2e-32
 Identities = 79/217 (36%), Positives = 114/217 (52%), Gaps = 21/217 (9%)
 Frame = +3

Query: 114 FSDFQKNLDQEQELRETIRTICKEVDQISREATTVLQVIHYNEAGIAPACGKARLLFEKA 293
           F  F+  LD+   LR+ IR +  EV+  SR A+  L ++H     +A   GKA+   E  
Sbjct: 81  FESFRAQLDESSTLRDRIRAVVSEVESASRVASAALLLVH-QPVPLADVLGKAKAQVEVI 139

Query: 294 HDGYARLKDAVP--PTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILASHETMAEILGVS 467
              Y+RL + +   P  Y++Y   WR  TQ    ++A   WLE G L  H    E LG  
Sbjct: 140 KGLYSRLAEILKECPGQYYRYHGDWRSETQAVVSMLAFMHWLETGGLLMHAEAQEKLGCM 199

Query: 468 P------------------VELKEG-FHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYER 590
           P                  +++  G F LD+EDYL GL  M ++  R  VN VT GDY+ 
Sbjct: 200 PGPCDGGVVHIDCVLCVMKLKVSSGEFGLDVEDYLTGLCFMSNDFPRYVVNRVTAGDYDC 259

Query: 591 PLRISKFVMELNAGFRLLNLKNDHLRKRFDALKYDVK 701
           P ++  F+ +L+A FR+LNL+ND LRK+FD +KYD++
Sbjct: 260 PRKVLSFLTDLHASFRMLNLRNDFLRKKFDGMKYDLR 296


>01_01_1144 -
           9066832-9066935,9067968-9068169,9068265-9068414,
           9068553-9068637,9069264-9069343,9069972-9070070
          Length = 239

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +3

Query: 483 EGFHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMELNAGFRL---LNLK 653
           E   +++ DY++G+  +  EL RLA+  ++ G+ E    I  FV ++     L   L   
Sbjct: 126 EPLQINVLDYVLGVADLSGELMRLAIGRISDGEVEYAKNICAFVRDIYRELTLVVPLMDD 185

Query: 654 NDHLRKRFDALKYDV 698
           N  ++K+ + +   V
Sbjct: 186 NSEMKKKMETMLQSV 200


>01_01_0611 +
           4541505-4541646,4543503-4543621,4543728-4543866,
           4543924-4544178,4545094-4545212
          Length = 257

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 231 HYNEAGIAPACGKARLLFEKAHDGYARLKDAVPPTDY 341
           HYN +  AP+ G ++ L     DGYA L++  PP ++
Sbjct: 208 HYNVSSSAPSAGDSKPL--PGDDGYAWLEECEPPDNF 242


>03_05_0071 - 20491521-20492813
          Length = 430

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 432 SHETMAEILGVSPVELKEGFHLDIEDYLIGLLTMCSELSRLAVNSV 569
           SH+   ++ G +P  + EGF  +  D  + LL      SR+A   V
Sbjct: 49  SHQRQMQVFGQAPDRVVEGFSEEFLDAFLTLLRRAHRHSRIAATVV 94


>04_03_0241 - 13243938-13244453,13244538-13246334
          Length = 770

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +2

Query: 473 GVKRRFPFGH*RLSDWTIDDVLRIVSSGRELCDPRRLRAPPEDLQVRDGTERRLQAIE 646
           GV    PF    + D+T   V   + +    C P R R PP +L V DG     +A E
Sbjct: 214 GVHHPVPFHLEEIHDYTSAGV---ILTDETTCQPTRRRLPPWNLGVLDGEPVPARAFE 268


>04_01_0483 +
           6343599-6343778,6343886-6344011,6344096-6344173,
           6344859-6344984,6345253-6345354,6345425-6345571,
           6345861-6345984,6346992-6347152
          Length = 347

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -1

Query: 374 GHESPVILILEVICWWYS--IFQSCVSIVGLL 285
           G  S V  +LE+ CWW+S  ++   VS+V +L
Sbjct: 291 GSSSGVAALLEMDCWWWSRQLWLEGVSLVAVL 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,604,348
Number of Sequences: 37544
Number of extensions: 346961
Number of successful extensions: 1088
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)