Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23a24
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    27   0.23 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   6.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +1

Query: 103 SIKYSVTSKRISTKNKNYERLFGLYVKRLTKYLGKRPQCSK*YTTMKPALLRHVAKLVYS 282
           +I+ SVT+ ++    + Y+R  GL + R+   L K  + SK    +          LVY 
Sbjct: 267 TIQSSVTTSKMMVSPRLYDRQNGLVLSRMNLTLAKMEKTSKPLPMVDNP--ESTGNLVYI 324

Query: 283 SRRPTMDTQD 312
              P  D ++
Sbjct: 325 YNNPFSDVEE 334


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 303 YARLKDAVPPTDYFKYQDHW 362
           +  LK  +PP  Y K  D W
Sbjct: 246 FTGLKSDIPPVAYVKALDVW 265


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 87  SDNELINKIFSDFQKNLDQEQELRETIRTIC 179
           S   + N ++ +   N D +++LRE I T C
Sbjct: 309 SSTTMSNALY-ELALNQDVQKKLREEINTFC 338


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 620 TERRLQAIELEERPFAQTLR 679
           TER L  +E+ E+P ++ LR
Sbjct: 40  TERLLPYVEIIEQPASKALR 59


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 620 TERRLQAIELEERPFAQTLR 679
           TER L  +E+ E+P ++ LR
Sbjct: 40  TERLLPYVEIIEQPASKALR 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,359
Number of Sequences: 438
Number of extensions: 3922
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)