Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23a17
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||... 62 8e-11
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 27 1.7
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 27 1.7
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 27 1.7
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 27 3.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.2
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 26 5.2
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 26 5.2
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 25 6.8
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 25 6.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.0
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 9.0
>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 186
Score = 61.7 bits (143), Expect = 8e-11
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 8/111 (7%)
Frame = +1
Query: 88 PPVLWAQR--KED-----VFLTFSV-ETKDPTIKIEKDSVYFRGEGAPDNRLHEVTIALY 243
P VLWAQR K+D ++LT + + DP I + + + + N + V I +
Sbjct: 8 PEVLWAQRSNKDDAEKNVIYLTVLIPDAVDPKINLTPEKLVIDSKSGA-NAHYAVQIDFF 66
Query: 244 DTVLPEKSVFVNKGRCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKW 396
+ EKS + GR + +L K++ FWP LTK+K + H+L+ DF++W
Sbjct: 67 KDIDVEKSKYSVTGRYIFFVLYKKELQEEFWPRLTKEKLRLHWLRTDFDRW 117
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 188 KYTESFSILIVGSLVSTLNVRKTSSFRCAHNTG 90
+Y E L V +++ST V+ SF+CAH G
Sbjct: 469 RYAELGRWLDVATILSTAEVQSQRSFQCAHLYG 501
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 323 SVFSFRNIISTHLPLFTKTLFSGRTVSYSAIVTSCSLLSGAPSPLKYTES 174
S+F F I L L TK++FS + ++ ++ C SG + YTES
Sbjct: 140 SIF-FHAIACYALYLLTKSIFSNQKMTAYTVIFYCFSPSGIYMSVGYTES 188
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 197 SPLKYTESFSILIVGSLVSTLNVRKTSSFRCAHNTGGGTEISL 69
SPLKYT S S +G + +L KT + + G ++ +L
Sbjct: 516 SPLKYTHSASKSFIGEVQDSLQALKTKAHKPRSIGGDSSQTTL 558
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = -1
Query: 305 NIISTHLPLFTKTLFSGRTVSYSA----IVTSCSLLSGAPSPLK 186
N++ T L + K LF +T S S +++SC+L+SGA L+
Sbjct: 274 NVLITALLISKKVLFLTKTSSASVLADFVLSSCALVSGATGLLQ 317
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 5.2
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = -1
Query: 326 PSVFSFRNIISTHLPLFTKTLFSGRTVSYSA--IVTSCSLLSGAPSPLKYTESFSILIVG 153
PS F+ I S+ L +T S S+ + + S SG+ S YT + S
Sbjct: 699 PSTFTTSFITSSSLSSIPNNSTEVKTASTSSGTEIKTASTSSGSSSSSSYTPASSTSTTT 758
Query: 152 SLVSTLNVRKTSSF 111
S VS+ +SSF
Sbjct: 759 SSVSSRQSSSSSSF 772
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 5.2
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +1
Query: 139 VETKDPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPEKSVFVNKGRCVEMILRKEK 318
V+ +D ++ +EK+++ + + V LY+ ++PEKS F VE+ L K K
Sbjct: 204 VKDEDVSLLMEKNTLKIEIKLEDGSIFSLVLDPLYEEIVPEKSSFKLFSSKVEITLIK-K 262
Query: 319 TDGPFWPTLTK 351
W L K
Sbjct: 263 VSEIKWEALVK 273
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 323 MVHSGRR*QKTRKSRIT*KLISTNGMMRMMKLKKIIHMISSKCSRTLV 466
++HS R +K T LI NG+ + L KI + + S R LV
Sbjct: 328 LLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILV 375
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = -1
Query: 311 FRNIISTHLPLFTKTLFSGRTVSYSAIVTSCSLL 210
FR+ ++ PLF + +F+ SY+ + ++L
Sbjct: 469 FRSAMAASFPLFARAMFNNTGPSYAPVAWGSTIL 502
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 25.4 bits (53), Expect = 6.8
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -1
Query: 335 QNGPSVFSFRNIISTHLPLFTKTLFSGRTVSYSAIVTSCSLLSGAPSPLKYTESFSILIV 156
Q + S R +IS +LF G + + T C+++SGA + + T + S+LI+
Sbjct: 357 QTNNLIRSNRELISLGAANIGSSLFCGLPICGGYLRTKCNIMSGARTQVA-TIACSVLIL 415
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.0
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = -1
Query: 260 SGRTVSYSAIVTSCSLLSGAPSPLKYTESFSILIVGS---LVSTLNVRKTSSFRCAHNTG 90
S T+S S+ S S S S K + SFS + S STL +SS R A ++
Sbjct: 339 SSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSS 398
Query: 89 GGTEIS 72
+ +S
Sbjct: 399 HSSSLS 404
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.0 bits (52), Expect = 9.0
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Frame = -1
Query: 365 GFFLSFVSVGQNGPSVFSFRNIISTHLPLFTKTLFSGRTVSYSAIVTSCSLL---SGAPS 195
G L+ + Q G FSF N + L TL + +T CSLL S P
Sbjct: 196 GSILALLCKTQKGDPYFSFLNAVLMKCVLTQHTLDVLLLTKKDSSMTLCSLLNAISFEPI 255
Query: 194 PLKYTESFSILIVGSL 147
LK F I+ S+
Sbjct: 256 NLKAIPLFFIICADSI 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,632
Number of Sequences: 5004
Number of extensions: 51320
Number of successful extensions: 134
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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