Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23a17
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0537 + 25363026-25363217,25363672-25363828,25364660-253646...    67   9e-12
03_03_0158 - 14951504-14951568,14952722-14952797,14952876-149529...    60   1e-09
08_02_0588 + 19036509-19039235                                         25   0.95 
01_06_0311 - 28377414-28377623,28377758-28377856,28378116-283782...    29   3.0  

>03_05_0537 +
           25363026-25363217,25363672-25363828,25364660-25364694,
           25364803-25364848,25365277-25365311
          Length = 154

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
 Frame = +1

Query: 88  PPVLWAQRKEDVFLTFSV-ETKDPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPEK 264
           P VLWAQR E ++LT S+ + KD  +K E   + F      +      T+ L+D+VLPE 
Sbjct: 7   PEVLWAQRSEKIYLTISLPDAKDVVLKTEPQGL-FSFLAVANGEPFSFTLELFDSVLPEG 65

Query: 265 SVFVNKGRCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKW 396
           S    K     +I   +K    +W  L K ++K  Y+K+D+NKW
Sbjct: 66  SKTKTKMGLRNIICSIQKEKKGWWKRLLKSEEKHPYIKVDWNKW 109


>03_03_0158 -
           14951504-14951568,14952722-14952797,14952876-14952943,
           14952997-14953156,14953239-14953425,14953982-14953986
          Length = 186

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 32/106 (30%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
 Frame = +1

Query: 88  PPVLWAQRKEDVFLTFSV-ETKDPTIKIEKDSVY-FRGEGAPDNRLHEVTIALYDTVLPE 261
           P   WAQR + VFLT  + + +D  + ++ +  + F  +G  D+  +E+ + L+D V  E
Sbjct: 5   PSTKWAQRSDKVFLTIELPDARDVKLNLKPEGQFIFSAKGPADDTPYELDLELFDAVNVE 64

Query: 262 KSVFVNKGRCVEMILRKEKTDGPFWPTLTKDKKKPH-YLKIDFNKW 396
           +S      R +  +++K   +  +WP L K + KP  +LK+D++KW
Sbjct: 65  ESKAAVAARSICYLIKK--AESKWWPRLLKKEGKPPVFLKVDWDKW 108


>08_02_0588 + 19036509-19039235
          Length = 908

 Score = 24.6 bits (51), Expect(2) = 0.95
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 444 ANAPELWWSWWSW 482
           AN   ++W+WW W
Sbjct: 10  ANLVRVFWAWWWW 22



 Score = 24.6 bits (51), Expect(2) = 0.95
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3

Query: 462 WWSWWSWAE 488
           WW WW W +
Sbjct: 20  WWWWWWWGD 28


>01_06_0311 -
           28377414-28377623,28377758-28377856,28378116-28378253,
           28378697-28378827,28378920-28379066,28379164-28379293,
           28379625-28379654,28380138-28380416
          Length = 387

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 124 FLTFSVETKDPTIKIEKDSVYFRGEGAPDNRL 219
           FL     TKD T+K+ +D  +   EG PD+R+
Sbjct: 341 FLYEKASTKDKTLKLYEDGYHSILEGEPDDRI 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,128,956
Number of Sequences: 37544
Number of extensions: 320653
Number of successful extensions: 918
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)