Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23a13
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    26   6.6  
SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    25   8.7  

>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/27 (33%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 651 FFLIREKI-PSLFKYCYGKQLKYGSQF 728
           + +++E +   +FK CY ++L+YG +F
Sbjct: 274 YSVVKESLLEEMFKECYLQKLRYGQEF 300


>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 260 QSNIRYSELPSWLE*IMDWLQF 325
           + N+R SE   W   +++W+QF
Sbjct: 114 RDNMRSSEKDQWKRGVLEWIQF 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,653
Number of Sequences: 5004
Number of extensions: 67977
Number of successful extensions: 151
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)