Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23a13
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 319 1e-87
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 319 1e-87
J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV) co... 318 4e-87
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 315 2e-86
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 315 2e-86
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 315 2e-86
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 253 9e-68
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 253 9e-68
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 250 6e-67
J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein. 250 6e-67
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr... 29 4.6
U64598-2|AAK39214.2| 558|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z75711-2|CAB00033.2| 425|Caenorhabditis elegans Hypothetical pr... 28 8.1
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 28 8.1
AF026206-1|AAK39306.1| 260|Caenorhabditis elegans Hypothetical ... 28 8.1
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 319 bits (784), Expect = 1e-87
Identities = 136/199 (68%), Positives = 159/199 (79%)
Frame = +3
Query: 3 LYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQPIPMMP 182
LYI+GNEK+HNQDLG+AGSC+++FSTMPFLFCD N+VCNYASRND+SYWLST + IPMMP
Sbjct: 1560 LYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFCDFNNVCNYASRNDKSYWLSTSEAIPMMP 1619
Query: 183 VEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXX 362
V + I YISRC VCE PAN IAVHSQT+ IP+CP GW+ LWIGYSF MHT
Sbjct: 1620 VNEREIEPYISRCAVCEAPANTIAVHSQTIQIPNCPAGWSSLWIGYSFAMHTGAGAEGGG 1679
Query: 363 XXLASPGSCLEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQ 542
L+SPGSCLEDFR+ PFIECNG G+CH+FANK SFWLTT+++ +F VPE QTLKSG
Sbjct: 1680 QSLSSPGSCLEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGN 1739
Query: 543 LLERVSRCAVCIKNTT*SH 599
L RVSRC VC+K+T H
Sbjct: 1740 LRTRVSRCQVCVKSTDGRH 1758
Score = 69.3 bits (162), Expect = 3e-12
Identities = 38/110 (34%), Positives = 56/110 (50%)
Frame = +3
Query: 246 VIAVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRSIPFIEC 425
V+ HSQT ++P CP G +LW GYS +++ L GSCL+ F ++PF+ C
Sbjct: 1533 VLVKHSQTTEVPRCPEGQTKLWDGYS-LLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFC 1591
Query: 426 NGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCAVC 575
+ + N S+WL+T E V ER ++ +SRCAVC
Sbjct: 1592 DFNNVCNYASRNDKSYWLSTSEAIPMMPVNER------EIEPYISRCAVC 1635
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 319 bits (784), Expect = 1e-87
Identities = 136/199 (68%), Positives = 159/199 (79%)
Frame = +3
Query: 3 LYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQPIPMMP 182
LYI+GNEK+HNQDLG+AGSC+++FSTMPFLFCD N+VCNYASRND+SYWLST + IPMMP
Sbjct: 1561 LYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFCDFNNVCNYASRNDKSYWLSTSEAIPMMP 1620
Query: 183 VEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXX 362
V + I YISRC VCE PAN IAVHSQT+ IP+CP GW+ LWIGYSF MHT
Sbjct: 1621 VNEREIEPYISRCAVCEAPANTIAVHSQTIQIPNCPAGWSSLWIGYSFAMHTGAGAEGGG 1680
Query: 363 XXLASPGSCLEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQ 542
L+SPGSCLEDFR+ PFIECNG G+CH+FANK SFWLTT+++ +F VPE QTLKSG
Sbjct: 1681 QSLSSPGSCLEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGN 1740
Query: 543 LLERVSRCAVCIKNTT*SH 599
L RVSRC VC+K+T H
Sbjct: 1741 LRTRVSRCQVCVKSTDGRH 1759
Score = 69.3 bits (162), Expect = 3e-12
Identities = 38/110 (34%), Positives = 56/110 (50%)
Frame = +3
Query: 246 VIAVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRSIPFIEC 425
V+ HSQT ++P CP G +LW GYS +++ L GSCL+ F ++PF+ C
Sbjct: 1534 VLVKHSQTTEVPRCPEGQTKLWDGYS-LLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFC 1592
Query: 426 NGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCAVC 575
+ + N S+WL+T E V ER ++ +SRCAVC
Sbjct: 1593 DFNNVCNYASRNDKSYWLSTSEAIPMMPVNER------EIEPYISRCAVC 1636
>J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV)
collagen protein.
Length = 261
Score = 318 bits (780), Expect = 4e-87
Identities = 135/199 (67%), Positives = 159/199 (79%)
Frame = +3
Query: 3 LYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQPIPMMP 182
LYI+GNEK+HNQDLG+AGSC+++FSTMPFLFCD N+VCNYASRN++SYWLST + IPMMP
Sbjct: 63 LYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFCDFNNVCNYASRNEKSYWLSTSEAIPMMP 122
Query: 183 VEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXX 362
V + I YISRC VCE PAN IAVHSQT+ IP+CP GW+ LWIGYSF MHT
Sbjct: 123 VNEREIEPYISRCAVCEAPANTIAVHSQTIQIPNCPAGWSSLWIGYSFAMHTGAGAEGGG 182
Query: 363 XXLASPGSCLEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQ 542
L+SPGSCLEDFR+ PFIECNG G+CH+FANK SFWLTT+++ +F VPE QTLKSG
Sbjct: 183 QSLSSPGSCLEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGN 242
Query: 543 LLERVSRCAVCIKNTT*SH 599
L RVSRC VC+K+T H
Sbjct: 243 LRTRVSRCQVCVKSTDGRH 261
Score = 70.1 bits (164), Expect = 2e-12
Identities = 38/110 (34%), Positives = 57/110 (51%)
Frame = +3
Query: 246 VIAVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRSIPFIEC 425
V+ HSQT ++P CP G +LW GYS +++ L GSCL+ F ++PF+ C
Sbjct: 36 VLVKHSQTTEVPRCPEGQTKLWDGYS-LLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFC 94
Query: 426 NGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCAVC 575
+ + N+ S+WL+T E V ER ++ +SRCAVC
Sbjct: 95 DFNNVCNYASRNEKSYWLSTSEAIPMMPVNER------EIEPYISRCAVC 138
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 315 bits (773), Expect = 2e-86
Identities = 134/199 (67%), Positives = 158/199 (79%)
Frame = +3
Query: 3 LYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQPIPMMP 182
LYI+GNEK+HNQDLG+AGSC+++FSTMPFLFCD N+VCNYASRN++SYWLST + IPMMP
Sbjct: 1561 LYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFCDFNNVCNYASRNEKSYWLSTSEAIPMMP 1620
Query: 183 VEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXX 362
V + I YISRC VCE PAN IAVHSQT+ IP+CP GW+ LWIGYSF MHT
Sbjct: 1621 VNEREIEPYISRCAVCEAPANTIAVHSQTIQIPNCPAGWSSLWIGYSFAMHTGAGAEGGG 1680
Query: 363 XXLASPGSCLEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQ 542
+SPGSCLEDFR+ PFIECNG G+CH+FANK SFWLTT+++ +F VPE QTLKSG
Sbjct: 1681 QSPSSPGSCLEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGN 1740
Query: 543 LLERVSRCAVCIKNTT*SH 599
L RVSRC VC+K+T H
Sbjct: 1741 LRTRVSRCQVCVKSTDGRH 1759
Score = 70.1 bits (164), Expect = 2e-12
Identities = 38/110 (34%), Positives = 57/110 (51%)
Frame = +3
Query: 246 VIAVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRSIPFIEC 425
V+ HSQT ++P CP G +LW GYS +++ L GSCL+ F ++PF+ C
Sbjct: 1534 VLVKHSQTTEVPRCPEGQTKLWDGYS-LLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFC 1592
Query: 426 NGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCAVC 575
+ + N+ S+WL+T E V ER ++ +SRCAVC
Sbjct: 1593 DFNNVCNYASRNEKSYWLSTSEAIPMMPVNER------EIEPYISRCAVC 1636
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 315 bits (773), Expect = 2e-86
Identities = 134/199 (67%), Positives = 158/199 (79%)
Frame = +3
Query: 3 LYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQPIPMMP 182
LYI+GNEK+HNQDLG+AGSC+++FSTMPFLFCD N+VCNYASRN++SYWLST + IPMMP
Sbjct: 1560 LYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFCDFNNVCNYASRNEKSYWLSTSEAIPMMP 1619
Query: 183 VEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXX 362
V + I YISRC VCE PAN IAVHSQT+ IP+CP GW+ LWIGYSF MHT
Sbjct: 1620 VNEREIEPYISRCAVCEAPANTIAVHSQTIQIPNCPAGWSSLWIGYSFAMHTGAGAEGGG 1679
Query: 363 XXLASPGSCLEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQ 542
+SPGSCLEDFR+ PFIECNG G+CH+FANK SFWLTT+++ +F VPE QTLKSG
Sbjct: 1680 QSPSSPGSCLEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGN 1739
Query: 543 LLERVSRCAVCIKNTT*SH 599
L RVSRC VC+K+T H
Sbjct: 1740 LRTRVSRCQVCVKSTDGRH 1758
Score = 70.1 bits (164), Expect = 2e-12
Identities = 38/110 (34%), Positives = 57/110 (51%)
Frame = +3
Query: 246 VIAVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRSIPFIEC 425
V+ HSQT ++P CP G +LW GYS +++ L GSCL+ F ++PF+ C
Sbjct: 1533 VLVKHSQTTEVPRCPEGQTKLWDGYS-LLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFC 1591
Query: 426 NGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCAVC 575
+ + N+ S+WL+T E V ER ++ +SRCAVC
Sbjct: 1592 DFNNVCNYASRNEKSYWLSTSEAIPMMPVNER------EIEPYISRCAVC 1635
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 315 bits (773), Expect = 2e-86
Identities = 134/199 (67%), Positives = 158/199 (79%)
Frame = +3
Query: 3 LYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQPIPMMP 182
LYI+GNEK+HNQDLG+AGSC+++FSTMPFLFCD N+VCNYASRN++SYWLST + IPMMP
Sbjct: 1597 LYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFCDFNNVCNYASRNEKSYWLSTSEAIPMMP 1656
Query: 183 VEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXX 362
V + I YISRC VCE PAN IAVHSQT+ IP+CP GW+ LWIGYSF MHT
Sbjct: 1657 VNEREIEPYISRCAVCEAPANTIAVHSQTIQIPNCPAGWSSLWIGYSFAMHTGAGAEGGG 1716
Query: 363 XXLASPGSCLEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQ 542
+SPGSCLEDFR+ PFIECNG G+CH+FANK SFWLTT+++ +F VPE QTLKSG
Sbjct: 1717 QSPSSPGSCLEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGN 1776
Query: 543 LLERVSRCAVCIKNTT*SH 599
L RVSRC VC+K+T H
Sbjct: 1777 LRTRVSRCQVCVKSTDGRH 1795
Score = 70.1 bits (164), Expect = 2e-12
Identities = 38/110 (34%), Positives = 57/110 (51%)
Frame = +3
Query: 246 VIAVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRSIPFIEC 425
V+ HSQT ++P CP G +LW GYS +++ L GSCL+ F ++PF+ C
Sbjct: 1570 VLVKHSQTTEVPRCPEGQTKLWDGYS-LLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFC 1628
Query: 426 NGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCAVC 575
+ + N+ S+WL+T E V ER ++ +SRCAVC
Sbjct: 1629 DFNNVCNYASRNEKSYWLSTSEAIPMMPVNER------EIEPYISRCAVC 1672
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 253 bits (620), Expect = 9e-68
Identities = 112/196 (57%), Positives = 141/196 (71%), Gaps = 2/196 (1%)
Frame = +3
Query: 3 LYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQPI-PMM 179
LY+ GN +A QDLG GSC+ KF+TMPF+FC++N VC+ +SRND S+WLST +P+ PMM
Sbjct: 1307 LYVQGNGRASGQDLGQPGSCLSKFNTMPFMFCNMNSVCHVSSRNDYSFWLSTDEPMTPMM 1366
Query: 180 -PVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXX 356
PV G I YISRC VCEVP +IAVHSQ +P CP GW+ +W GYSFVMHT
Sbjct: 1367 NPVTGTAIRPYISRCAVCEVPTQIIAVHSQDTSVPQCPQGWSGMWTGYSFVMHTAAGAEG 1426
Query: 357 XXXXLASPGSCLEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKS 536
L SPGSCLE+FR++PFIEC+G GTC+++A FWL+ V+ +QF P QTLK+
Sbjct: 1427 TGQSLQSPGSCLEEFRAVPFIECHGR-GTCNYYATNHGFWLSIVDQDKQFRKPMSQTLKA 1485
Query: 537 GQLLERVSRCAVCIKN 584
G L +RVSRC VC+KN
Sbjct: 1486 GGLKDRVSRCQVCLKN 1501
Score = 73.7 bits (173), Expect = 1e-13
Identities = 41/109 (37%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Frame = +3
Query: 252 AVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRSIPFIECNG 431
A HSQT +P CP G ++LW GYS +++ L PGSCL F ++PF+ CN
Sbjct: 1282 AKHSQTTAVPQCPPGASQLWEGYS-LLYVQGNGRASGQDLGQPGSCLSKFNTMPFMFCN- 1339
Query: 432 EGGTCH-HFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCAVC 575
CH N SFWL+T E P + + +SRCAVC
Sbjct: 1340 MNSVCHVSSRNDYSFWLSTDEPM----TPMMNPVTGTAIRPYISRCAVC 1384
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 253 bits (620), Expect = 9e-68
Identities = 112/196 (57%), Positives = 141/196 (71%), Gaps = 2/196 (1%)
Frame = +3
Query: 3 LYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQPI-PMM 179
LY+ GN +A QDLG GSC+ KF+TMPF+FC++N VC+ +SRND S+WLST +P+ PMM
Sbjct: 1564 LYVQGNGRASGQDLGQPGSCLSKFNTMPFMFCNMNSVCHVSSRNDYSFWLSTDEPMTPMM 1623
Query: 180 -PVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXX 356
PV G I YISRC VCEVP +IAVHSQ +P CP GW+ +W GYSFVMHT
Sbjct: 1624 NPVTGTAIRPYISRCAVCEVPTQIIAVHSQDTSVPQCPQGWSGMWTGYSFVMHTAAGAEG 1683
Query: 357 XXXXLASPGSCLEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKS 536
L SPGSCLE+FR++PFIEC+G GTC+++A FWL+ V+ +QF P QTLK+
Sbjct: 1684 TGQSLQSPGSCLEEFRAVPFIECHGR-GTCNYYATNHGFWLSIVDQDKQFRKPMSQTLKA 1742
Query: 537 GQLLERVSRCAVCIKN 584
G L +RVSRC VC+KN
Sbjct: 1743 GGLKDRVSRCQVCLKN 1758
Score = 73.7 bits (173), Expect = 1e-13
Identities = 41/109 (37%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Frame = +3
Query: 252 AVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRSIPFIECNG 431
A HSQT +P CP G ++LW GYS +++ L PGSCL F ++PF+ CN
Sbjct: 1539 AKHSQTTAVPQCPPGASQLWEGYS-LLYVQGNGRASGQDLGQPGSCLSKFNTMPFMFCN- 1596
Query: 432 EGGTCH-HFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCAVC 575
CH N SFWL+T E P + + +SRCAVC
Sbjct: 1597 MNSVCHVSSRNDYSFWLSTDEPM----TPMMNPVTGTAIRPYISRCAVC 1641
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 250 bits (613), Expect = 6e-67
Identities = 111/196 (56%), Positives = 140/196 (71%), Gaps = 2/196 (1%)
Frame = +3
Query: 3 LYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQPI-PMM 179
LY+ GN +A QDLG GSC+ KF+TMPF+FC++N VC+ +SRND S+WLST +P+ PMM
Sbjct: 1563 LYVQGNGRASGQDLGQPGSCLSKFNTMPFMFCNMNSVCHVSSRNDYSFWLSTDEPMTPMM 1622
Query: 180 -PVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXX 356
PV G I YISRC VCEVP +IAVHSQ +P CP GW+ +W GYSFVMHT
Sbjct: 1623 NPVTGTAIRPYISRCAVCEVPTQIIAVHSQDTSVPQCPQGWSGMWTGYSFVMHTAAGAEG 1682
Query: 357 XXXXLASPGSCLEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKS 536
L SPGSCLE+FR++PFIEC+G GTC+++A FW + V+ +QF P QTLK+
Sbjct: 1683 TGQSLQSPGSCLEEFRAVPFIECHGR-GTCNYYATNHGFWPSIVDQDKQFRKPMSQTLKA 1741
Query: 537 GQLLERVSRCAVCIKN 584
G L +RVSRC VC+KN
Sbjct: 1742 GGLKDRVSRCQVCLKN 1757
Score = 73.7 bits (173), Expect = 1e-13
Identities = 41/109 (37%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Frame = +3
Query: 252 AVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRSIPFIECNG 431
A HSQT +P CP G ++LW GYS +++ L PGSCL F ++PF+ CN
Sbjct: 1538 AKHSQTTAVPQCPPGASQLWEGYS-LLYVQGNGRASGQDLGQPGSCLSKFNTMPFMFCN- 1595
Query: 432 EGGTCH-HFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCAVC 575
CH N SFWL+T E P + + +SRCAVC
Sbjct: 1596 MNSVCHVSSRNDYSFWLSTDEPM----TPMMNPVTGTAIRPYISRCAVC 1640
>J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein.
Length = 313
Score = 250 bits (613), Expect = 6e-67
Identities = 111/196 (56%), Positives = 140/196 (71%), Gaps = 2/196 (1%)
Frame = +3
Query: 3 LYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQPI-PMM 179
LY+ GN +A QDLG GSC+ KF+TMPF+FC++N VC+ +SRND S+WLST +P+ PMM
Sbjct: 118 LYVQGNGRASGQDLGQPGSCLSKFNTMPFMFCNMNSVCHVSSRNDYSFWLSTDEPMTPMM 177
Query: 180 -PVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXX 356
PV G I YISRC VCEVP +IAVHSQ +P CP GW+ +W GYSFVMHT
Sbjct: 178 NPVTGTAIRPYISRCAVCEVPTQIIAVHSQDTSVPQCPQGWSGMWTGYSFVMHTAAGAEG 237
Query: 357 XXXXLASPGSCLEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKS 536
L SPGSCLE+FR++PFIEC+G GTC+++A FW + V+ +QF P QTLK+
Sbjct: 238 TGQSLQSPGSCLEEFRAVPFIECHGR-GTCNYYATNHGFWPSIVDQDKQFRKPMSQTLKA 296
Query: 537 GQLLERVSRCAVCIKN 584
G L +RVSRC VC+KN
Sbjct: 297 GGLKDRVSRCQVCLKN 312
Score = 73.7 bits (173), Expect = 1e-13
Identities = 41/109 (37%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Frame = +3
Query: 252 AVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRSIPFIECNG 431
A HSQT +P CP G ++LW GYS +++ L PGSCL F ++PF+ CN
Sbjct: 93 AKHSQTTAVPQCPPGASQLWEGYS-LLYVQGNGRASGQDLGQPGSCLSKFNTMPFMFCN- 150
Query: 432 EGGTCH-HFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCAVC 575
CH N SFWL+T E P + + +SRCAVC
Sbjct: 151 MNSVCHVSSRNDYSFWLSTDEPM----TPMMNPVTGTAIRPYISRCAVC 195
>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical protein
F45E4.3a protein.
Length = 1231
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 445 QVPPSPLHSINGIERKSSKH 386
+VPP P+H INGI S H
Sbjct: 995 RVPPVPMHRINGINNNSVLH 1014
>U64598-2|AAK39214.2| 558|Caenorhabditis elegans Hypothetical
protein C52B9.4 protein.
Length = 558
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 195 NIAKYISRCVVCEVPANVI-AVHSQTLDI-PSCPVGWNELWIGYSF 326
N+ ++ + + V A+VI + S I P+C V W ELW+ +F
Sbjct: 391 NVYRHFANTLAFSVIASVIFMLWSMIYHIFPTCRVDWKELWVDTAF 436
>Z75711-2|CAB00033.2| 425|Caenorhabditis elegans Hypothetical
protein K02B12.3 protein.
Length = 425
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 33 NQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQ 164
NQD+G+ CV KF T +++ C + Y ++ GQ
Sbjct: 61 NQDVGFQSKCVGKFDTGSMATMNMDVACAF-DEISAKYVIAAGQ 103
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -2
Query: 674 YFFSYQEETAISYTEKYSSRKL*KIMRLCRILNANRTSRDSF 549
YFF Y E IS + S KL + +RL ++ A+ + DSF
Sbjct: 44 YFFLYHETLIISKQKGACSYKLKEKLRLEKVWIASSNTADSF 85
>AF026206-1|AAK39306.1| 260|Caenorhabditis elegans Hypothetical
protein T28B4.2 protein.
Length = 260
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 257 TQSNIRYSELPSWLE*IMDWLQFCYAHWCR 346
T++ + Y +LP E + WL + Y WCR
Sbjct: 150 TRTKVLYEDLPDPSE--LRWLSWMYFRWCR 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,713,804
Number of Sequences: 27780
Number of extensions: 379741
Number of successful extensions: 816
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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