Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23a11
(740 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 25 0.56
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 25 0.56
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 25 0.56
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 25 0.56
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 25 0.56
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 25 0.56
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 25 0.75
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 25 0.99
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 23 3.0
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 5.3
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 22 5.3
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 22 5.3
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 22 5.3
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 22 5.3
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 22 5.3
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 22 5.3
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 22 5.3
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 22 5.3
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 22 5.3
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 21 9.2
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 25.4 bits (53), Expect = 0.56
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 403 RTTLHDFEHTATHYCSMFRLCIR 471
R+ H F+HT++HY S R C R
Sbjct: 218 RSRTHGFQHTSSHY-SRERSCSR 239
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 25.4 bits (53), Expect = 0.56
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 403 RTTLHDFEHTATHYCSMFRLCIR 471
R+ H F+HT++HY S R C R
Sbjct: 218 RSRTHGFQHTSSHY-SRERSCSR 239
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 25.4 bits (53), Expect = 0.56
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 403 RTTLHDFEHTATHYCSMFRLCIR 471
R+ H F+HT++HY S R C R
Sbjct: 218 RSRTHGFQHTSSHY-SRERSCSR 239
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 25.4 bits (53), Expect = 0.56
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 403 RTTLHDFEHTATHYCSMFRLCIR 471
R+ H F+HT++HY S R C R
Sbjct: 218 RSRTHGFQHTSSHY-SRERSCSR 239
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 25.4 bits (53), Expect = 0.56
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 403 RTTLHDFEHTATHYCSMFRLCIR 471
R+ H F+HT++HY S R C R
Sbjct: 207 RSRTHGFQHTSSHY-SRERSCSR 228
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 25.4 bits (53), Expect = 0.56
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 403 RTTLHDFEHTATHYCSMFRLCIR 471
R+ H F+HT++HY S R C R
Sbjct: 218 RSRTHGFQHTSSHY-SRERSCSR 239
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 25.0 bits (52), Expect = 0.75
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 403 RTTLHDFEHTATHYCSMFRLCIR 471
R+ HDF+HT++ Y S R C R
Sbjct: 218 RSRTHDFQHTSSRY-SRERSCSR 239
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 24.6 bits (51), Expect = 0.99
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 403 RTTLHDFEHTATHYCSMFRLCIR 471
R HDF+HT++ Y S R C R
Sbjct: 218 RNRTHDFQHTSSRY-SRERRCSR 239
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 23.0 bits (47), Expect = 3.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 410 RCMISSTLLLTTVLCFACAFVPKGV 484
R ++ TLLL +LC+ C + KGV
Sbjct: 173 RWELAGTLLLVWILCYFCIW--KGV 195
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.2 bits (45), Expect = 5.3
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 399 LSSNSVTMIRAGASDIDD-SVKVK*KLSPIFSESLISASMVTPLIIE 262
L SN ++R + D +VK+K KLS + +L + M T L +E
Sbjct: 32 LLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLWVE 78
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 22.2 bits (45), Expect = 5.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 403 RTTLHDFEHTATHYCSMFRLCIR 471
R+ H F+HT++ Y S R C R
Sbjct: 207 RSRTHGFQHTSSRY-SRERSCSR 228
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.2 bits (45), Expect = 5.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 403 RTTLHDFEHTATHYCSMFRLCIR 471
R+ H F+HT++ Y S R C R
Sbjct: 207 RSRTHGFQHTSSRY-SRERSCSR 228
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 22.2 bits (45), Expect = 5.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 403 RTTLHDFEHTATHYCSMFRLCIR 471
R+ H F+HT++ Y S R C R
Sbjct: 218 RSRTHGFQHTSSRY-SRERSCSR 239
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 5.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 403 RTTLHDFEHTATHYCSMFRLCIR 471
R+ H F+HT++ Y S R C R
Sbjct: 218 RSRTHGFQHTSSRY-SRERSCSR 239
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 22.2 bits (45), Expect = 5.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 403 RTTLHDFEHTATHYCSMFRLCIR 471
R+ H F+HT++ Y S R C R
Sbjct: 218 RSRTHGFQHTSSRY-SRERSCSR 239
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.2 bits (45), Expect = 5.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 403 RTTLHDFEHTATHYCSMFRLCIR 471
R+ H F+HT++ Y S R C R
Sbjct: 218 RSRTHGFQHTSSRY-SRERSCSR 239
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 22.2 bits (45), Expect = 5.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 403 RTTLHDFEHTATHYCSMFRLCIR 471
R+ H F+HT++ Y S R C R
Sbjct: 218 RSRTHGFQHTSSRY-SRERSCSR 239
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 22.2 bits (45), Expect = 5.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 403 RTTLHDFEHTATHYCSMFRLCIR 471
R+ H F+HT++ Y S R C R
Sbjct: 218 RSRTHGFQHTSSRY-SRERSCSR 239
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 22.2 bits (45), Expect = 5.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 403 RTTLHDFEHTATHYCSMFRLCIR 471
R+ H F+HT++ Y S R C R
Sbjct: 218 RSRTHGFQHTSSRY-SRERSCSR 239
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.4 bits (43), Expect = 9.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 113 FESVNKRRIPDDAIEEFIIVSNNKQETDE 199
F V +RR+ A+ IVS+N + E
Sbjct: 329 FSDVEERRVSKTAMNSNQIVSDNSLSSSE 357
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,755
Number of Sequences: 438
Number of extensions: 4412
Number of successful extensions: 20
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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