Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23a10
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 265 3e-71
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 250 8e-67
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 33 0.28
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 32 0.49
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 2.6
01_02_0013 + 10162478-10163581 29 2.6
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 29 4.6
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 29 4.6
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958... 29 4.6
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 8.0
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 265 bits (649), Expect = 3e-71
Identities = 132/217 (60%), Positives = 159/217 (73%), Gaps = 9/217 (4%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 207
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60
Query: 208 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTL 387
LDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV V A PF+QWY +HY +
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 388 PLGRKK--------GAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXXQFHTGRL 543
+GRKK A+ E E A K+S RK RQ+ ++ + QF +GRL
Sbjct: 121 DIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSGRL 180
Query: 544 LACVASXPGQCGRADGYILEGKELEFYLRKIKSKRAK 654
LAC++S PGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 250 bits (612), Expect = 8e-67
Identities = 132/234 (56%), Positives = 159/234 (67%), Gaps = 26/234 (11%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 207
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 208 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTL 387
LDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV V A PF+QWY +HY +
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 388 PLGRKKGA-------------------------KLTEAEEAIINKKRSQKTARKYLARQR 492
+GRKK A K +AE K+S RK RQ+
Sbjct: 121 DIGRKKKAPAAKKDAEHALGKIRCLFIGLYVMLKGQDAEATTEEAKKSNHVVRKLEKRQQ 180
Query: 493 LAKVEGALXXQFHTGRLLACVASXPGQCGRADGYILEGKELEFYLRKIKSKRAK 654
++ + QF +GRLLAC++S PGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 181 GRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 234
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +1
Query: 103 RKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 237
R+ +LG P+ +T+ P+R+ S+++R K+ A DTG F+WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +1
Query: 157 IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 336
+H + + GG T R +R + C +++ ++V++ + NELV T +N I+
Sbjct: 376 LHGLLASGGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQII 435
Query: 337 V 339
V
Sbjct: 436 V 436
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 58 KRRATGGKRAPIRKKRKYELGRPAA---NTRLGPQRIHSVRSRGGNTKYRALR 207
KRR GG+RA R+K + E GR A R G R R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGR--RKRRRGGRRRRRRRR 131
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 58 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 192
KRR GG+RA R+K + E GR A R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 58 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 192
+RR GG+RA R+K + E GR A R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>01_02_0013 + 10162478-10163581
Length = 367
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 182 EILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRPL 319
E +S RC P+ G R + A SL + ++HL +C RPL
Sbjct: 240 EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARPL 283
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +1
Query: 211 DTGN-FSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNA-IVVVXATPF 357
DT N FS+GS+ ++ + + + ++ S+ ++ + +V NA IVV A+PF
Sbjct: 1340 DTNNCFSYGSQRASTERTLGNDMHPGSSIQITESARIVNNANIVVQVASPF 1390
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 140 GSVLSVSTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMN 298
G + P + VV + + C+W + SLG R Q++K + L ++ + +N
Sbjct: 270 GHQMVTINPLLSVVAA-TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321
>03_04_0037 +
16694760-16695227,16695563-16695642,16695735-16695828,
16695973-16696071,16696650-16696742,16696822-16696941,
16697422-16697525,16697734-16697806,16698023-16698085
Length = 397
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 526 FHTGRLLACVASXPGQCGRADGYILEGKELEFYLRKIKSKRAK 654
F+ +LA AS P +C R + + G + LRK S R K
Sbjct: 104 FYLRYILAAAASGPCRCRRKESLVGMGNYISRVLRKSSSDRGK 146
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 43 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS 165
R H T G+ P + Y LG P A +GP +H+
Sbjct: 210 RPETHTFHLTVGEMVPTLQDVSYLLGLPIAGAAVGPTMVHA 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,348,122
Number of Sequences: 37544
Number of extensions: 385112
Number of successful extensions: 1070
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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