Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23a10
(688 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 351 1e-96
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 351 1e-96
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 351 1e-96
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 351 1e-96
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 291 2e-78
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 113 7e-25
AK127331-1|BAC86934.1| 178|Homo sapiens , member 1 (TRPV1). pr... 30 8.9
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 351 bits (863), Expect = 1e-96
Identities = 159/208 (76%), Positives = 180/208 (86%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 211 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTLP 390
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++ +TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 391 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXXQFHTGRLLACVASXPG 570
LGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L QF G+LLAC+AS PG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 571 QCGRADGYILEGKELEFYLRKIKSKRAK 654
QCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 181 QCGRADGYVLEGKELEFYLRKIKARKGK 208
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 351 bits (863), Expect = 1e-96
Identities = 159/208 (76%), Positives = 180/208 (86%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 211 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTLP 390
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++ +TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 391 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXXQFHTGRLLACVASXPG 570
LGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L QF G+LLAC+AS PG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 571 QCGRADGYILEGKELEFYLRKIKSKRAK 654
QCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 181 QCGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 351 bits (863), Expect = 1e-96
Identities = 159/208 (76%), Positives = 180/208 (86%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 211 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTLP 390
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++ +TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 391 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXXQFHTGRLLACVASXPG 570
LGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L QF G+LLAC+AS PG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 571 QCGRADGYILEGKELEFYLRKIKSKRAK 654
QCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 181 QCGRADGYVLEGKELEFYLRKIKARKGK 208
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 351 bits (863), Expect = 1e-96
Identities = 159/208 (76%), Positives = 180/208 (86%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 211 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTLP 390
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++ +TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 391 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXXQFHTGRLLACVASXPG 570
LGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L QF G+LLAC+AS PG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 571 QCGRADGYILEGKELEFYLRKIKSKRAK 654
QCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 181 QCGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 291 bits (713), Expect = 2e-78
Identities = 142/208 (68%), Positives = 163/208 (78%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGG
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51
Query: 211 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVXATPFRQWYESHYTLP 390
C TRKTRIIDVVYNASNNELVRTKTLVKN IV++ +TP+RQWYESHY LP
Sbjct: 52 ----------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 100
Query: 391 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXXQFHTGRLLACVASXPG 570
LGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L QF G+LLAC+AS PG
Sbjct: 101 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 160
Query: 571 QCGRADGYILEGKELEFYLRKIKSKRAK 654
QCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 161 QCGRADGYVLEGKELEFYLRKIKARKGK 188
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 113 bits (271), Expect = 7e-25
Identities = 51/80 (63%), Positives = 63/80 (78%)
Frame = +1
Query: 415 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXXQFHTGRLLACVASXPGQCGRADGY 594
LT EE I+NKKRS+K +KY R++ AK+ L QF G+LLAC+AS PGQCGRADGY
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGY 60
Query: 595 ILEGKELEFYLRKIKSKRAK 654
+LEGKELEFYLRKIK+++ K
Sbjct: 61 VLEGKELEFYLRKIKARKGK 80
>AK127331-1|BAC86934.1| 178|Homo sapiens , member 1 (TRPV1).
protein.
Length = 178
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 325 NAIVVVXATPFRQWYESHYTLPLGRKKGAKLT 420
N I+ V TPF W + H++ P G LT
Sbjct: 5 NPIIAVFRTPFAPWLQFHWSAPFSAWLGTVLT 36
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,109,493
Number of Sequences: 237096
Number of extensions: 2136919
Number of successful extensions: 4326
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4326
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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