Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23a04
(617 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal prote... 294 3e-80
U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal prote... 292 1e-79
AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical... 30 1.2
U88176-4|ABB51191.1| 427|Caenorhabditis elegans Hypothetical pr... 30 1.5
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm rece... 29 2.7
Z54327-1|CAA91119.1| 569|Caenorhabditis elegans Hypothetical pr... 25 5.3
U29488-1|AAA68773.2| 338|Caenorhabditis elegans Serpentine rece... 28 6.1
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical pr... 27 8.1
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 27 8.1
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 27 8.1
AF016685-8|AAG24150.1| 340|Caenorhabditis elegans Seven tm rece... 27 8.1
>U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.2 protein.
Length = 196
Score = 294 bits (722), Expect = 3e-80
Identities = 137/173 (79%), Positives = 154/173 (89%)
Frame = +3
Query: 90 SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEK 269
++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEK
Sbjct: 15 ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEK 74
Query: 270 IAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYG 449
IAVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDPSIGIYG
Sbjct: 75 IAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYG 134
Query: 450 LDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILNSKAK 608
+DFYVVL R G +A RRR G+VG HR+ +E+++KWFQQKYDGIIL K K
Sbjct: 135 MDFYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESIKWFQQKYDGIILPPKPK 187
>U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.1 protein.
Length = 196
Score = 292 bits (717), Expect = 1e-79
Identities = 136/172 (79%), Positives = 151/172 (87%)
Frame = +3
Query: 93 KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI 272
+NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKI
Sbjct: 16 RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKI 75
Query: 273 AVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGL 452
AVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDP IGIYG+
Sbjct: 76 AVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGM 135
Query: 453 DFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILNSKAK 608
DFYVVL R G V+ RRR G++G HR+ KE+ +KWFQQKYDGIIL K K
Sbjct: 136 DFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIILPPKPK 187
>AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical
protein Y66D12A.23 protein.
Length = 448
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 285 TVRGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 443
++R AEE+ RG + Y E+RR TG FG G + + I + S+ +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406
>U88176-4|ABB51191.1| 427|Caenorhabditis elegans Hypothetical
protein F18F11.3 protein.
Length = 427
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 426 DPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKE 548
DP GI G+ + V G F +A R+ +GK RL K+
Sbjct: 160 DPDTGISGISRFSVEGDSSFTLAKRKCSSGKCSTQLRLAKK 200
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 386 AKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDT 249
AK+ + G ++ PQ FS+F+ + FF + T+ N I+ D+
Sbjct: 5666 AKMLQTG-IIPPQVNFSEFRDGMGQFFTVNGKKSTISQNSLISIDS 5710
>AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm
receptor protein 86 protein.
Length = 341
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 347 FIFSDFQTPLKDFF-CFSSSDCTMDSNLFIT 258
++ DF+ +KDFF C SD T S +F T
Sbjct: 300 YVIKDFRIGVKDFFKCGKKSDNTSSSTIFTT 330
>Z54327-1|CAA91119.1| 569|Caenorhabditis elegans Hypothetical
protein C26D10.1 protein.
Length = 569
Score = 24.6 bits (51), Expect(2) = 5.3
Identities = 14/56 (25%), Positives = 22/56 (39%)
Frame = +3
Query: 435 IGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILNSK 602
+ I G+ V+LG G A + +G + K+D W I +SK
Sbjct: 438 VNIEGVQHVVILGSDGKVFAMGKNTDNALGLGNWTGKDDQQHWLYDTIQEIEFDSK 493
Score = 21.8 bits (44), Expect(2) = 5.3
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 381 FGFGIQEHIDLGIKYDPS-IGIYGLD 455
+ FG+ + LGIK D + +G G D
Sbjct: 391 YAFGLNNYAQLGIKVDEADVGQDGQD 416
>U29488-1|AAA68773.2| 338|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 31 protein.
Length = 338
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 302 FSSSDCTMDSNLFITTDTKRPHCIPSLGKYRLLS 201
F SS+C ++SNL+ T+ C SL RLLS
Sbjct: 97 FQSSECLIESNLYYYTNLFSSLCCISLFFDRLLS 130
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical protein
Y76A2B.1 protein.
Length = 1057
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +1
Query: 352 GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVST*HTEGVRQEKWDFP 531
GV +S PR I ASV + + SST T ++ + H QE P
Sbjct: 946 GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005
Query: 532 TASQRKM 552
T S R M
Sbjct: 1006 TPSSRNM 1012
>Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical
protein C09F9.3 protein.
Length = 800
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 293 SDCTMDSNLFITTDTKRPHCIPSLGK---YRLLSCELLQHL 180
S CT+D F D+K+ C+ S+ K Y +++ E+ H+
Sbjct: 205 SICTIDGQRFSLGDSKKNFCLQSVSKAFNYAIVASEIGSHV 245
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +1
Query: 352 GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVST*HTEGVRQEKWDFP 531
GV +S PR I ASV + + SST T ++ + H QE P
Sbjct: 946 GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005
Query: 532 TASQRKM 552
T S R M
Sbjct: 1006 TPSSRNM 1012
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +1
Query: 352 GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVST*HTEGVRQEKWDFP 531
GV +S PR I ASV + + SST T ++ + H QE P
Sbjct: 946 GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005
Query: 532 TASQRKM 552
T S R M
Sbjct: 1006 TPSSRNM 1012
>AF016685-8|AAG24150.1| 340|Caenorhabditis elegans Seven tm
receptor protein 85 protein.
Length = 340
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 347 FIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDTKRPH 237
++ DF+T +K+FF + T S+ +TT K H
Sbjct: 300 YVIKDFRTAVKNFFKRGTKSGTSPSSAVLTTKKKAWH 336
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,456,134
Number of Sequences: 27780
Number of extensions: 311126
Number of successful extensions: 828
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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