Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22p14
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    59   6e-10
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   2.1  
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family...    27   2.1  
SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.4  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   6.4  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    26   6.4  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.5  
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    25   8.5  

>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 59.3 bits (137), Expect = 6e-10
 Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 8/199 (4%)
 Frame = +3

Query: 159 VFVLDGGFSTQLTCHAGHTADGDPLWSARFLKTHPQDVINTHLDFLRAGSDIIETNTYQA 338
           + +LDGG ST +      +     LW++  L  +P+ V+  H +FL+   DII T TYQ 
Sbjct: 1   MLMLDGG-STAILPKLPESISESRLWTSEALVRYPEIVVKHHEEFLKV-CDIISTFTYQL 58

Query: 339 SVDGFVKHLNLTVEESYELIKSAVEFARTARDLYLQECQESNLSGRKPLIAGSVGPYGAY 518
               +        +E  E +     +A +   + L      +L      IA  +G + A 
Sbjct: 59  DASIY--------DEKVEGVPLKQVYANS---IGLPVYAREHLGLPNKYIALCLGSHAAT 107

Query: 519 LHDTSEYTGNYADNTTKETIKNWHRTRIQALVEAG------VDILAFETIPCQKEAEALV 680
           +    EY   Y   T  E + N+H+ RI+A+  +       +D +AFE++P   EAE + 
Sbjct: 108 IPGCMEYKMIYDKPTDFEMLYNFHKNRIEAIQASNPKAFEKIDFIAFESLPHVTEAEVVC 167

Query: 681 EILKEYP--NMKAWLSFSC 731
           +++++    + + W++ +C
Sbjct: 168 QLIQDMKGWSKRCWITCTC 186


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 483 LIAGSVGPYGAYLHDTSEYTGNYADNTTKETIKNWHRTR 599
           L+AG     GA +   S+YT +  D T       W +TR
Sbjct: 93  LVAGGAAYIGAQVQRASDYTKDIFDKTFGILDSTWEKTR 131


>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 624 HLPLLMLEFLSYANFL-WFPLLYYQHNYRC 538
           H+ LL++  +  A  L WFPLL+ + +Y C
Sbjct: 4   HILLLVISLVCAALTLSWFPLLFRKQSYSC 33


>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 126 IMSNFEVSSKTVFVLDGGFSTQLTCHAG 209
           ++   EVS K ++VLD  F+     H G
Sbjct: 23  LLERLEVSDKPIYVLDSSFNPPHFAHLG 50


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 225 RHQQY-DRRDRSTVLRILHPTQRLSLKILQNSTLFHKRISL*YVNYC 88
           RH+   D  D++T+  +LH   RL   + +  T FH  +     +YC
Sbjct: 137 RHKHLLDIPDQTTLSSLLHRHTRLPRDVRRKHTCFHTSVWCDMSSYC 183


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -2

Query: 612 LMLEFLSYANFLWFPLLYYQHNYRCILM 529
           ++L+   +A+ +  P  Y+QHN+R I++
Sbjct: 78  IVLDVRVFASAIELPGAYFQHNFRSIIV 105


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -3

Query: 395 QFVALFDS*VQMLNKSIYGGLVSICFDDVRASTKEVQMCVNNILRVCL*KSCTPKRIAIS 216
           Q +A   + +  L K   G  VSI     R   KE++   NN+L V    S   ++ ++S
Sbjct: 69  QLIATMQNEIDRLKKE--GDKVSILLMQERKKRKELESAKNNLLNVY--DSLKMQKASVS 124

Query: 215 SM 210
           SM
Sbjct: 125 SM 126


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = -2

Query: 228 DRHQQYDRRDRSTVLRILHPTQRLSLKILQNSTLFHKRISL*YVNYCNTPIEFFTII 58
           D   Q + +    V  +   T+      L    + + RI + YVNY + P+E F+ +
Sbjct: 84  DNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYIDEPVELFSFL 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,595
Number of Sequences: 5004
Number of extensions: 65954
Number of successful extensions: 214
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)