Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22p12
         (336 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178     29   0.71 
03_05_0710 + 27038709-27038865,27039205-27039346,27039383-270395...    27   3.8  
03_01_0210 + 1652040-1652186,1652446-1652853                           27   3.8  
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023...    26   8.7  

>03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178
          Length = 1122

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = +1

Query: 100 LVILRLSCEKLNSVQRLPHPSNHNALLTPSPQK*AGWWYLPLRTHKLTKRPTTSNYLNYN 279
           L ILRL            HPS+ N + TP P+      +  LR HK  +     NY  Y 
Sbjct: 748 LQILRLDWSDGVCPNNCSHPSSQNDVATPDPEH-EEEIFESLRPHKNIEELEVVNYSGYK 806

Query: 280 FAS 288
           + S
Sbjct: 807 YPS 809


>03_05_0710 +
           27038709-27038865,27039205-27039346,27039383-27039558,
           27039639-27039703,27040000-27040371,27040429-27040504,
           27040505-27040571,27040672-27040825,27041122-27041289,
           27041392-27041502,27041612-27041722,27041864-27041881,
           27041917-27042018,27042587-27042817,27043390-27043464,
           27043744-27043815,27044597-27044782,27044868-27045026,
           27045251-27045343,27045730-27045801,27046336-27046426,
           27046669-27046847,27047252-27047333,27047526-27047636,
           27047715-27047821,27048194-27048271,27048357-27048452,
           27048627-27048722,27048839-27048856
          Length = 1154

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 185 GVSNALWFEGWGSRCTL 135
           GV+N++W +G G RC L
Sbjct: 42  GVANSVWMDGSGERCWL 58


>03_01_0210 + 1652040-1652186,1652446-1652853
          Length = 184

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 211 WYLPLRTHKLTKRPTTSNYLNYNFASLIFITRYNS 315
           W LPL+  K TKRPT       + A+    T Y S
Sbjct: 41  WLLPLKKVKATKRPTKPTKAQTSHAATHARTLYES 75


>02_05_0938 +
           32901143-32901215,32901841-32901982,32902243-32902314,
           32902573-32902644,32902711-32902782,32902913-32902948,
           32903001-32903072,32903319-32903387,32903483-32903554,
           32903668-32903739,32903838-32903909,32904153-32904224,
           32904470-32904541,32904623-32904694,32904782-32904853,
           32904911-32905003,32905150-32905218,32905315-32905386,
           32905479-32905552,32905643-32905771,32905966-32906331,
           32906584-32906954,32907522-32907890
          Length = 884

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 97  LLVILRLSCEKLNSVQRLPHPSNHNALLTPSPQK*AGWWYLPLRTHKLT 243
           +L  LRL+   +  + R    +N    L+P   +  G WYL L  ++LT
Sbjct: 140 VLQYLRLNICNVGQIVRGLRSNNLEGSLSPEMCQLTGLWYLDLSYNRLT 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,625,613
Number of Sequences: 37544
Number of extensions: 162050
Number of successful extensions: 305
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)