Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22p12
(336 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098501-7|AAC67402.1| 199|Caenorhabditis elegans Hypothetical ... 30 0.47
Z81547-1|CAB04459.1| 354|Caenorhabditis elegans Hypothetical pr... 28 1.9
U39651-5|AAL11482.2| 395|Caenorhabditis elegans Temporarily ass... 27 4.4
Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical pr... 26 7.7
Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical pr... 26 7.7
AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 prot... 26 7.7
AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 prot... 26 7.7
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 26 7.7
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 26 7.7
AF003383-1|AAB54234.1| 379|Caenorhabditis elegans Hypothetical ... 26 7.7
>AF098501-7|AAC67402.1| 199|Caenorhabditis elegans Hypothetical
protein H28G03.3 protein.
Length = 199
Score = 29.9 bits (64), Expect = 0.47
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 157 PSNHNALLTPSPQK*AGWWYLPLRTHKLTKRPTTSNYLNYNFASL 291
P+N+ A+ TPSP + A W Y + T + + + YL A +
Sbjct: 74 PANNFAVQTPSPAQIAAWGYSGVSTVEYEQMKNKNEYLQREHAEM 118
>Z81547-1|CAB04459.1| 354|Caenorhabditis elegans Hypothetical
protein F53F8.1 protein.
Length = 354
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 140 YNGCPTLQTITHYLLLHRRNRQGGGTYPC 226
Y GC + T + +L H R G YPC
Sbjct: 257 YQGCGKVYTKSSHLTAHERVHSGEKPYPC 285
>U39651-5|AAL11482.2| 395|Caenorhabditis elegans Temporarily
assigned gene nameprotein 22, isoform a protein.
Length = 395
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 124 EKLNSVQRLPHPSNHNALLTPSPQK 198
E+LN + RL N+N +TPS K
Sbjct: 85 ERLNGIARLAFSLNNNCAVTPSSNK 109
>Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical protein
W07E11.1 protein.
Length = 2207
Score = 25.8 bits (54), Expect = 7.7
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +1
Query: 112 RLSCEKLNSVQRLPHPSNHNALLTPSPQK*AGWWYLPLRT---HKLTKRPTTSNYLNYNF 282
RL C+ + + + LP P + P P+ W L R H+ K T S+ Y+
Sbjct: 2006 RLGCKTVGAFEILPQPGPNRKPENPWPE-----WPLIFRVDYGHEEAKEMTGSDPRTYSV 2060
Query: 283 ASLIFITRYNS 315
++ F+T N+
Sbjct: 2061 STKRFLTTTNA 2071
>Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical protein
W07E11.1 protein.
Length = 2207
Score = 25.8 bits (54), Expect = 7.7
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +1
Query: 112 RLSCEKLNSVQRLPHPSNHNALLTPSPQK*AGWWYLPLRT---HKLTKRPTTSNYLNYNF 282
RL C+ + + + LP P + P P+ W L R H+ K T S+ Y+
Sbjct: 2006 RLGCKTVGAFEILPQPGPNRKPENPWPE-----WPLIFRVDYGHEEAKEMTGSDPRTYSV 2060
Query: 283 ASLIFITRYNS 315
++ F+T N+
Sbjct: 2061 STKRFLTTTNA 2071
>AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 protein
protein.
Length = 2693
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +1
Query: 154 HPSNHNALLTPSPQK*AGWWYLPLRTHKLTKRPTTSNYLNYNFASL 291
HP+ + +T SP+ W Y+ HK+ +T+++ F +
Sbjct: 1850 HPTTLSCNVTGSPEPTLEWIYIDDSGHKINLTSSTTDWTECRFGKV 1895
>AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 protein
protein.
Length = 2708
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +1
Query: 154 HPSNHNALLTPSPQK*AGWWYLPLRTHKLTKRPTTSNYLNYNFASL 291
HP+ + +T SP+ W Y+ HK+ +T+++ F +
Sbjct: 1865 HPTTLSCNVTGSPEPTLEWIYIDDSGHKINLTSSTTDWTECRFGKV 1910
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +1
Query: 154 HPSNHNALLTPSPQK*AGWWYLPLRTHKLTKRPTTSNYLNYNFASL 291
HP+ + +T SP+ W Y+ HK+ +T+++ F +
Sbjct: 17676 HPTTLSCNVTGSPEPTLEWIYIDDSGHKINLTSSTTDWTECRFGKV 17721
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +1
Query: 154 HPSNHNALLTPSPQK*AGWWYLPLRTHKLTKRPTTSNYLNYNFASL 291
HP+ + +T SP+ W Y+ HK+ +T+++ F +
Sbjct: 17691 HPTTLSCNVTGSPEPTLEWIYIDDSGHKINLTSSTTDWTECRFGKV 17736
>AF003383-1|AAB54234.1| 379|Caenorhabditis elegans Hypothetical
protein ZC250.2 protein.
Length = 379
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -2
Query: 215 YHHPAYF-CGEGVSNALWFEGWGSRCTLFNFSQLSRSITRSIMHV 84
+HHP YF CG+ + + + +C++ F + S SI+ S +HV
Sbjct: 122 HHHPDYFCCGDTIDSCI------VKCSI-PFPKTSNSISDSEVHV 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,501,796
Number of Sequences: 27780
Number of extensions: 141407
Number of successful extensions: 335
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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