Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22p09
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914...    36   0.036
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148...    33   0.25 
01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,589...    31   1.3  
04_04_0827 - 28457858-28458028,28458513-28458669,28458984-284590...    28   9.5  

>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
            10791796-10791903,10793133-10797686,10798347-10798461,
            10799597-10799724,10799843-10800043,10800158-10800227,
            10801233-10801314,10801433-10801556,10801761-10801778
          Length = 1960

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = +2

Query: 188  EIENDKIYKLVETVDSSNKLSRRQVDFL-IHALLNNVSVTFTLHRFVDDNVLTQDELSFL 364
            ++  DK   +VE++DSS ++ + Q D L +  LL N      L   VDD   T+DE+  L
Sbjct: 1404 QVGTDKSRDIVESIDSSERVLKYQDDILQLKVLLTN------LEEQVDDLRSTKDEVEIL 1457

Query: 365  ANFLVTKLDE 394
               L +KL+E
Sbjct: 1458 NMVLKSKLEE 1467


>02_01_0003 +
           13079-13610,14005-14312,14364-14549,14620-14707,
           14807-14887,14980-15044,15357-15497,15578-15694,
           15995-16237,16326-16383,18127-18224
          Length = 638

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 15/59 (25%), Positives = 32/59 (54%)
 Frame = +1

Query: 583 LNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGD 759
           ++ + +E  DDD+  +++   TPE  +   + ++    L +E DI++++  D P   GD
Sbjct: 289 MDDIDDEYDDDDDDDLNMRDATPEPDELDQDIVE--SDLELEGDIVESDHQDPPQKMGD 345


>01_01_0762 +
           5889925-5890136,5891110-5891273,5891755-5891878,
           5891941-5892073,5892629-5892732,5892867-5895780,
           5895876-5895965,5896251-5896355,5896633-5896740,
           5896826-5896876
          Length = 1334

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = +1

Query: 571 VTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPAT 750
           +TL   S+P+     D+ + D P+ +PE+ +   ++  P  T+ I+   I ++ T+A   
Sbjct: 565 ITLPNQSLPDSKEIPDSKAEDAPIDSPEKLEPGPSSYTP--TIPIKESSIVSQNTNAENV 622

Query: 751 SGD 759
           SGD
Sbjct: 623 SGD 625


>04_04_0827 -
           28457858-28458028,28458513-28458669,28458984-28459083,
           28459204-28459231,28459321-28459396,28461276-28461355,
           28461642-28461805,28461897-28462056,28462154-28462277,
           28462901-28463941,28464141-28464259,28464512-28464823,
           28465222-28465425,28466068-28466751,28467301-28467474
          Length = 1197

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 568 NVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDII 720
           +VT +L S  E C+  D  +   P+   ++KDD      P  + +IE D++
Sbjct: 566 SVTTKLLSY-ETCSVSDGINPASPINENKKKDDLSYGHVPMHSQSIEHDVV 615


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,797,665
Number of Sequences: 37544
Number of extensions: 305854
Number of successful extensions: 834
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)