Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22p04
(759 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 27 0.25
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 27 0.25
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 27 0.25
AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cycl... 23 2.4
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 3.1
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 23 3.1
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 23 4.1
X16709-1|CAA34681.1| 162|Apis mellifera phospholipase A-2 protein. 21 9.5
EF373554-1|ABQ28728.1| 167|Apis mellifera phospholipase A2 prot... 21 9.5
AF438408-1|AAL30844.1| 167|Apis mellifera phospholipase A2 prot... 21 9.5
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 26.6 bits (56), Expect = 0.25
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = -1
Query: 237 CSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVTVSWLSFIKNLTSFILLDLLT 58
CSS RF+ C+ + +I+ + FFN ++ W++F + L+D++
Sbjct: 84 CSSFRFYWDL-----CMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVV 138
Query: 57 N 55
N
Sbjct: 139 N 139
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 26.6 bits (56), Expect = 0.25
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = -1
Query: 237 CSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVTVSWLSFIKNLTSFILLDLLT 58
CSS RF+ C+ + +I+ + FFN ++ W++F + L+D++
Sbjct: 84 CSSFRFYWDL-----CMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVV 138
Query: 57 N 55
N
Sbjct: 139 N 139
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 26.6 bits (56), Expect = 0.25
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = -1
Query: 237 CSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVTVSWLSFIKNLTSFILLDLLT 58
CSS RF+ C+ + +I+ + FFN ++ W++F + L+D++
Sbjct: 84 CSSFRFYWDL-----CMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVV 138
Query: 57 N 55
N
Sbjct: 139 N 139
>AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cyclase
beta-3 protein.
Length = 832
Score = 23.4 bits (48), Expect = 2.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 35 RYCFHDKLVNKSSRMKLVRFLMKLSHETVTIELKNGS 145
RYC VN +SRM+ M++ T EL + S
Sbjct: 537 RYCLFGDSVNTASRMEATSQAMQIHISQSTKELLSPS 573
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.0 bits (47), Expect = 3.1
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -3
Query: 757 YGICLLNYNLMYSLIYV 707
+ +C + +NLMY +IY+
Sbjct: 412 FPVCFVCFNLMYWIIYL 428
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.0 bits (47), Expect = 3.1
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -3
Query: 757 YGICLLNYNLMYSLIYV 707
+ +C + +NLMY +IY+
Sbjct: 412 FPVCFVCFNLMYWIIYL 428
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 22.6 bits (46), Expect = 4.1
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -3
Query: 757 YGICLLNYNLMYSLIY 710
+ +C + +NLMY +IY
Sbjct: 350 FPVCFVCFNLMYWIIY 365
>X16709-1|CAA34681.1| 162|Apis mellifera phospholipase A-2 protein.
Length = 162
Score = 21.4 bits (43), Expect = 9.5
Identities = 6/17 (35%), Positives = 11/17 (64%)
Frame = -2
Query: 740 KLQFNVFSNLCFRLQDP 690
K+ FN+ C++L+ P
Sbjct: 113 KMYFNLIDTKCYKLEHP 129
>EF373554-1|ABQ28728.1| 167|Apis mellifera phospholipase A2
protein.
Length = 167
Score = 21.4 bits (43), Expect = 9.5
Identities = 6/17 (35%), Positives = 11/17 (64%)
Frame = -2
Query: 740 KLQFNVFSNLCFRLQDP 690
K+ FN+ C++L+ P
Sbjct: 118 KMYFNLIDTKCYKLEHP 134
>AF438408-1|AAL30844.1| 167|Apis mellifera phospholipase A2
protein.
Length = 167
Score = 21.4 bits (43), Expect = 9.5
Identities = 6/17 (35%), Positives = 11/17 (64%)
Frame = -2
Query: 740 KLQFNVFSNLCFRLQDP 690
K+ FN+ C++L+ P
Sbjct: 118 KMYFNLIDTKCYKLEHP 134
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,514
Number of Sequences: 438
Number of extensions: 3011
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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