Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22p02
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 30 0.43
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 28 1.8
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha... 26 7.1
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 26 7.1
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 7.1
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 7.1
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po... 26 7.1
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 9.4
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 25 9.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 9.4
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 29.9 bits (64), Expect = 0.43
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 417 HLSHNCTLQNKKSKVVRYTELNRL 346
HL++N T NKK K+ ELNRL
Sbjct: 97 HLTNNSTESNKKGKIFSRKELNRL 120
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 27.9 bits (59), Expect = 1.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 664 YQYTFCFQKIKDLCIKTP 717
Y Y+FCFQK +C+ +P
Sbjct: 119 YGYSFCFQKFLKICLFSP 136
>SPBC409.20c |psh3||ER chaperone SHR3 homologue
Psh3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 7.1
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = -3
Query: 722 QYGVLMQRSFIFWKQKVYWYWPFACVNKFFMPYKLGCCKAIQ*TRYT*ICNLYNSHKFI* 543
+YGVLM SFIF + ++ A VN + P A + T YT + SH FI
Sbjct: 20 RYGVLMSTSFIF---ALLFHSSVADVNTLWSPGPESAFDAAE-TYYTLVA---GSH-FIV 71
Query: 542 HI*VFCLFSRTVIFYIWKTTSS 477
V+ + +IF++ + T +
Sbjct: 72 KYTVYTIMGLNMIFHLIQATGA 93
>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
scaffold protein Isu1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 192
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 462 NYQILRTGCFPYIKYHCSRKKAEDLNMSDKFMRIIKVANLG 584
N QI + C P +K HCS + + + K R ++ +G
Sbjct: 141 NTQIAKELCLPPVKLHCSMLAEDAIKSAVKHYRSKQLTPVG 181
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -3
Query: 251 HDLEEIIS--S*NYFKVRNVCFIFKPICN 171
H L II+ N +RNVC +F P N
Sbjct: 1201 HHLRRIIAFEKVNKMNIRNVCIVFSPTLN 1229
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 673 TFCFQKIKDLCIKTPYCKHYLLIKKTKVWYS 765
TFC I LCI C H + K W+S
Sbjct: 1266 TFCCLSIHGLCIVCGLCLHVMHEDCYKEWFS 1296
>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 282 WKCMATLIARFSNKPTSSEVLTAYLTQC 365
WK + + RF K T E+LTA QC
Sbjct: 84 WKQVIEVDRRFRTKATEFELLTATAFQC 111
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -2
Query: 507 DILYMENNQFLIFDSWNYQPSN*NLTFQTDHLSHNCTLQNKKSKVVRYTELNRLLEPRMM 328
D+LY E Q I D N N L + + L +N L+ + SKV+R E + L+ +
Sbjct: 426 DLLYQEQIQSSIKDMENVFRKNEYLMEELNELKNN--LEVESSKVLRLDEEMKCLKDEQL 483
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -3
Query: 521 FSRTVIFYIWKTTSS*YLIVGITNLPIKI*HSKLIIFHITVLYKIRSPRWFVTLS 357
F+ I Y K T Y +VG+ P I H IF K +SP +T+S
Sbjct: 99 FNSCFITYGQKGTGKTYSVVGLRGQPGIIPHISESIFEEIDKLKKKSPNTTITVS 153
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 583 VYLVYCMALQQPSL*GMKNLFTQAKGQYQYTFCFQKIKDLCIKTPYCKHYLLI 741
VY++ AL + SL G N+ T+ +T +K +D C Y K Y+ +
Sbjct: 2200 VYVISPKALTKESLFGSMNMDTREWTDGVFTKLLRKTRDSC----YYKRYMFV 2248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,356,134
Number of Sequences: 5004
Number of extensions: 72611
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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