Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22p02
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021571-3|CAC70102.2|  344|Caenorhabditis elegans Hypothetical ...    30   2.2  
AL033510-1|CAA22064.2|  339|Caenorhabditis elegans Hypothetical ...    29   5.0  
AL023853-1|CAA19558.1|  370|Caenorhabditis elegans Hypothetical ...    28   8.8  

>AL021571-3|CAC70102.2|  344|Caenorhabditis elegans Hypothetical
           protein T19A6.4 protein.
          Length = 344

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 658 PLLV*TSSSCLISWVAARPYSKQGIPKFATFIILINLSDIF---KSSAFFL 515
           P+L+ ++ SCL  W   R Y   G+PK     +++N   I      S+FFL
Sbjct: 87  PILIWSTVSCLTGWATTR-YGLFGVPKGIPSSVILNYIGIIVLVVGSSFFL 136


>AL033510-1|CAA22064.2|  339|Caenorhabditis elegans Hypothetical
           protein Y40H7A.1 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 282 WKCMATLIARFSNKPTSSEVLTAYLTQCNEPPWTS-YFVKYSYVKDDQFGMSNFNW 446
           W     LIAR    P   EVL   +T       T  Y+V  SY  +++ G+ + NW
Sbjct: 154 WGLCIFLIAR--ETPQVDEVLRPVMTSSFNLNMTEVYYVAASYAVENELGIRSLNW 207


>AL023853-1|CAA19558.1|  370|Caenorhabditis elegans Hypothetical
           protein Y71A12C.1 protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 414 LSHNCTLQNKKSKVVRYTEL 355
           L H C LQN KS   R+TEL
Sbjct: 278 LLHYCCLQNSKSAPARFTEL 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,129,352
Number of Sequences: 27780
Number of extensions: 388034
Number of successful extensions: 724
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)