Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22o23
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    26   1.9  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   4.3  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   5.7  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    24   7.6  

>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = -1

Query: 212 RVRS*LTLQQNFEQVPKSCSFACFLIKPSVQTPPR*ST*FDSNFASHRRPRHLILAAVSK 33
           R +  +T QQ FE+  K+ +     ++  V    +       N A HR+ R  IL  +SK
Sbjct: 173 RQKGTMTQQQRFEEAAKTEAQNLSSLRNYVHLEEQRRLRLKRNAAKHRQLREPILKFISK 232

Query: 32  TDTADN 15
           T + ++
Sbjct: 233 TISTED 238


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 267 FEH*LITILQNLLDAYTKKQTY 332
           F H   ++LQNLL  +TKK+ Y
Sbjct: 167 FSHIRDSLLQNLLYMFTKKRLY 188


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 281  DYNFTEFIRCVYQKTNIRFA 340
            DYNF     C Y K+NI F+
Sbjct: 944  DYNFWSKNECKYVKSNITFS 963


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 10  SVLSAVSVFDTAARIKCRGRRWLAK-FESNHVD 105
           +V S+    DT   + C GR WL +  ES +VD
Sbjct: 726 TVYSSTGESDTYGVLSCLGRVWLQRGRESKNVD 758


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,384,027
Number of Sequences: 5004
Number of extensions: 23688
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)