Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22o23
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0038 + 375893-376093,376758-376883,376978-377177,377411-37...    31   0.44 
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071...    27   5.5  
08_02_1463 - 27313436-27314146                                         26   9.5  
05_01_0198 + 1429396-1430640                                           26   9.5  

>06_01_0038 +
           375893-376093,376758-376883,376978-377177,377411-377502,
           377966-378222,378610-378846,378986-379063,380422-380571,
           380646-380720,381109-381205,381289-381341
          Length = 521

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 257 ITSVRTLIDYNFTEFIRCVYQKTNIRFAIDQYLCTNIVTFIDF 385
           ++ V +L+D+NF+E I   + KT I F+ D   C     +ID+
Sbjct: 449 LSKVYSLMDFNFSEPIHSCFGKTKIEFSHDG-TCHGFAVWIDW 490


>06_03_0740 -
           24006485-24006629,24006821-24006864,24006954-24007122,
           24007226-24007413,24007572-24007634,24007992-24008084,
           24009837-24009932,24010024-24010067,24010184-24010357,
           24010764-24010974
          Length = 408

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 47  PESNVAGVGGSQSLNQITLTNEEESELTALLKN 145
           PES +A +    ++N I L++E+++ L   LKN
Sbjct: 112 PESIIATISHRSTMNGIELSSEDKAILVETLKN 144


>08_02_1463 - 27313436-27314146
          Length = 236

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 84  LCEPPTPATFDSGGCVENGYGG 19
           L EPP P T   G C + G GG
Sbjct: 208 LIEPPPPPTTAEGFCDDEGCGG 229


>05_01_0198 + 1429396-1430640
          Length = 414

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 75  PPTPATFDSGGCVEN 31
           PP P  FDSGG VE+
Sbjct: 213 PPPPFVFDSGGMVES 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,520,239
Number of Sequences: 37544
Number of extensions: 138718
Number of successful extensions: 304
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)