Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22o23
         (398 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026202-6|AAB71245.2|  594|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z82059-2|CAB04876.3|  557|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z81583-1|CAB04671.1|  234|Caenorhabditis elegans Hypothetical pr...    27   6.5  

>AF026202-6|AAB71245.2|  594|Caenorhabditis elegans Hypothetical
           protein C10E2.6 protein.
          Length = 594

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 236 MINVISSITSVRTLIDYNFTEFIRCVYQKTNIRFAIDQYLCTNIVTFID 382
           M N+  +I  + T+  Y F  FI          F+I  Y+C   V  +D
Sbjct: 470 MYNISLTICGLLTVFCYQFNGFIPLATYSALFGFSIASYICLTSVILVD 518


>Z82059-2|CAB04876.3|  557|Caenorhabditis elegans Hypothetical
           protein T27E9.5 protein.
          Length = 557

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 34  FDTAARIKCRGRRWLAKFESNHVD*RGGV*TDGFIKK 144
           F T AR+  +GRR L   ES+H +   G+  D  IKK
Sbjct: 513 FGTTARVLVKGRRRLCYLESSHEN--LGMLQDDVIKK 547


>Z81583-1|CAB04671.1|  234|Caenorhabditis elegans Hypothetical
           protein T02G6.1 protein.
          Length = 234

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 397 FFFKKIYKRNYVSAQILIYCKTYVCFLVYASNKFCK 290
           +F+K+IY++N    Q LI   T   FL   S K+ K
Sbjct: 188 YFYKRIYQKNQYVCQFLI--NTIADFLTNFSKKWIK 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,759,507
Number of Sequences: 27780
Number of extensions: 135336
Number of successful extensions: 307
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)