Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22o22
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078782-1|AAC26913.1|  361|Caenorhabditis elegans Hypothetical ...    31   0.68 
AF016667-1|AAB66088.2|  162|Caenorhabditis elegans Hypothetical ...    29   4.8  
AC006761-6|AAF60548.2|  242|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z68298-7|CAA92604.1|  447|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AF078782-1|AAC26913.1|  361|Caenorhabditis elegans Hypothetical
           protein H34P18.1 protein.
          Length = 361

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 102 MYFFLTAQHASLVAICVDLYFCKLRS*NFSN 10
           +Y+   A HAS + + V + FC+++S NF+N
Sbjct: 116 IYYLAAAFHASSLYLAVGMAFCRVKSLNFAN 146


>AF016667-1|AAB66088.2|  162|Caenorhabditis elegans Hypothetical
           protein T20H12.1 protein.
          Length = 162

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 435 LSRRRLCAESKNFSMYLFNVLFFERFSSF 349
           LS +RL  +S+ F  YLFN +FF   S F
Sbjct: 44  LSSQRLDVQSQIFCCYLFNRVFFLEISPF 72


>AC006761-6|AAF60548.2|  242|Caenorhabditis elegans Hypothetical
           protein Y41G9A.2 protein.
          Length = 242

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 650 VDTTLPIGIFFGF--RIKRPLSDDSPFTTIKRVDALFVFSVIIRASVFV 510
           ++TT  +G F      ++RP+    PF T+      FV S+II  +VF+
Sbjct: 191 IETTCGLGSFLTVIQAVERPIQIYLPFCTLSSSAISFVQSIIISLAVFL 239


>Z68298-7|CAA92604.1|  447|Caenorhabditis elegans Hypothetical
           protein F44D12.8 protein.
          Length = 447

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/49 (22%), Positives = 29/49 (59%)
 Frame = +3

Query: 483 KTKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKNS 629
           K + N  L+ ENT+    ++++ER  + N + ++  +  + +S+ +++S
Sbjct: 113 KNQVNQSLSAENTNAKTSSDNDERAGSKNDKPKKKNSHTSSDSRRRRSS 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,355,600
Number of Sequences: 27780
Number of extensions: 234379
Number of successful extensions: 709
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)