Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22o17
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    85   1e-17
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    31   0.14 
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    30   0.44 
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    28   1.8  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   3.1  
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    25   9.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.4  

>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 45/111 (40%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
 Frame = +2

Query: 461 DLREPIRDHIAELRTELETMRSSITSQAREHVRADEVLLTFGASALVERFLR-PTQNRNC 637
           D+R  I   I ++  EL+ + + I  Q+ +H+ ++E++LT G S  VE FLR   + R  
Sbjct: 168 DMRAVIISGIQDVIDELDKINTDIEVQSMDHLHSNEIILTQGCSKTVEAFLRFAAKKRKF 227

Query: 638 KVVVAEGTDVGEFCLQSHAMARRLSNSGVSVTVINSSCVFAVMSRVNKVVV 790
            V+VAEG    +    SHAMA+RL+ +G+  TVI+ + +FA+MSRVNKV++
Sbjct: 228 SVIVAEGFPNNQ--KGSHAMAKRLAQAGIDTTVISDATIFAIMSRVNKVIL 276



 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
 Frame = +2

Query: 122 VGKFVADIRNNKLSGSEQIAEATLTLVEKIISDSN-ATARELCGVLRAAARRISSSLPLE 298
           V   +AD+++ K+ G   +A  T  ++ ++IS +  +T  +L   +RA    +  + P E
Sbjct: 13  VSSLIADLKSRKVQGPFAVAVETALVMRQVISQTRWSTVDQLIDTVRAVGSTLVKAQPTE 72

Query: 299 LVAINMIRRVLRAIRDENRASVDQFQSGEGVGESLQGLVLATPARHSIVPSTDQ 460
               N+IRR+LR IR+E +  +      E +  S      ++P++   +PS ++
Sbjct: 73  FSCGNIIRRILRLIREEYQELLKTADENEKLIVSSSN--SSSPSQKRDIPSNEK 124


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
 Frame = +2

Query: 383 EGVGESLQGLVLATPARHSIVPSTDQDLREPIRDHIAELRTELETMRSSITSQAREHVRA 562
           E VG S Q   L+  ++ S     ++  R  + D IAELR  + T+RS   S   + ++ 
Sbjct: 411 EPVGLSTQEQNLSPLSKRSAHNMIEKRYRSNLNDKIAELRDAVPTLRSGYNSTTADELKG 470

Query: 563 DEVLLT--FGASALVER---FLRPTQNRNCKVV 646
             V L+     + ++ +   +++  Q++N K++
Sbjct: 471 TYVPLSRKLNKATILSKATEYIKSLQSKNKKLI 503


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -3

Query: 246 QSSRAVALESLIIFSTSVSVASAICSEPDNLLFLMSATNLPTVSMCFSLNS 94
           ++S  V   S+I+  T+++VA ++ S P N+    SA N   + +  +LNS
Sbjct: 176 KNSNHVFATSIILIVTAIAVALSLESFPSNIERYFSAVNHSAIELSDALNS 226


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 200 VEKIISDSNATARE-LCGVLRAAARRISSSLPLELVAINMIRRVLRAIRDENRASVD 367
           + K ++D NATARE +   L A A   S +  +E   + ++  V+  + D+  A  D
Sbjct: 57  ISKQLNDKNATARERVLKGLEAVANHGSVAADVEPYLVELLPAVIAKVADKQNAVRD 113


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 128  KFVADIRNNKLSGSEQIAEATLTLVEKIISDSNATARE 241
            K V D   N LS  +Q+ +    L+EK +  + ATA E
Sbjct: 1040 KLVNDAALNSLSNRQQLLDEAADLIEKDLEFAGATAIE 1077


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 413 VLATPARHSIVPSTDQDLREPIRDHI-AELRTEL--ETMRSSITSQAREHVR 559
           ++      ++ P  ++DL +P+RD+I  E R +L  E+   S  S +  H R
Sbjct: 150 IIQNEVEQTLSPKDEKDLLDPMRDYIHREKRRKLKHESSDRSDKSDSNRHSR 201


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 23/95 (24%), Positives = 41/95 (43%)
 Frame = -3

Query: 396  SPTPSPLWNWSTEALFSSLMALKTLLIMLIATSSSGKLELIRRAAARRTPQSSRAVALES 217
            S + +  W+ S+E   S+  +        IAT+S         A A  T  S+ ++A  S
Sbjct: 949  SSSSASSWSSSSEVDPSTAASATGSSTSSIATASVSGSSTSSVATASATDSSTSSIAAAS 1008

Query: 216  LIIFSTSVSVASAICSEPDNLLFLMSATNLPTVSM 112
            +   STS    +++     + +   SAT+  T S+
Sbjct: 1009 VTGSSTSSVATASVTDSSTSSVATASATDSSTSSI 1043


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,722
Number of Sequences: 5004
Number of extensions: 52691
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)