Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22o17
(791 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0069 - 12576197-12576290,12576658-12576851,12577671-125777... 73 2e-13
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124... 40 0.002
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 36 0.028
01_05_0242 + 19828521-19829252 31 1.4
11_01_0712 - 5844291-5844474,5844722-5844777,5844861-5844959,584... 30 1.8
01_02_0048 - 10626467-10627498,10628522-10628617 30 2.4
02_05_0599 - 30251708-30251815,30251864-30251984,30252068-302522... 29 3.2
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 29 4.2
03_02_0177 - 6185091-6185355,6185468-6185524,6185725-6186089,618... 29 5.6
01_06_0209 - 27549615-27550246,27550358-27550452,27553290-275535... 29 5.6
10_01_0138 + 1657028-1657489 28 7.4
09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800 28 7.4
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466... 28 7.4
12_01_0304 - 2299676-2299938,2300493-2300841 28 9.8
04_04_1129 - 31107892-31110246 28 9.8
03_06_0722 - 35751490-35754357 28 9.8
>10_07_0069 -
12576197-12576290,12576658-12576851,12577671-12577796,
12577879-12577981,12578085-12578192,12579343-12579472,
12579685-12579966,12581046-12581200,12581306-12581358
Length = 414
Score = 73.3 bits (172), Expect = 2e-13
Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Frame = +2
Query: 449 STDQDLREPIRDHIAELRTELETMRSSITSQAREHVRADEVLLTFGASALVERFLRPTQN 628
S + L+ + I +L E++T I+ QA EH+ +EV+LT G S V+ FL +
Sbjct: 169 SKSRKLKHDVIAAIGDLIDEIDTCYDQISEQAVEHIHQNEVILTLGRSRTVKEFLYAAKE 228
Query: 629 --RNCKVVVAEGTDVGEFCLQSHAMARRLSNSGVSVTVINSSCVFAVMSRVNKVVV 790
R+ +V VAEG + H +A+ L GV TVI S VFA++SRVN V+V
Sbjct: 229 KKRSFRVFVAEGAPR----YKGHVLAKELVEKGVQTTVITDSAVFAMISRVNMVIV 280
Score = 51.6 bits (118), Expect = 7e-07
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 18/137 (13%)
Frame = +2
Query: 122 VGKFVADIRNNKLSGSEQIAEATLTLVEKIISD----SNATARELCGVLRAAARRISSSL 289
V +FV ++ K+ GS +A T L+ ++S S A L +R ++ ++
Sbjct: 8 VSEFVLKLKRRKVEGSHAVARQTAELLRSVVSQHRMGSTNQAAALADAVRGVGEQLIAAN 67
Query: 290 PLELVAINMIRRVLRAIRDENRASV--------------DQFQSGEGVGESLQGLVLATP 427
P+EL N++RRVL I++E+ +S D++ SG +L VLA
Sbjct: 68 PIELAVGNIVRRVLHIIKEEDISSTAVGIEGLSVTAESDDEYDSGNDDHPTLSAAVLAAH 127
Query: 428 ARHSIVPSTDQDLREPI 478
AR+++ + Q L E I
Sbjct: 128 ARNALRAPSLQTLLEDI 144
>03_05_0478 -
24712157-24712177,24712206-24712260,24712377-24712473,
24712558-24713302,24713822-24714189,24714279-24714419,
24715480-24715849
Length = 598
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Frame = +2
Query: 530 ITSQAREHVRADEVLLTFGASALVERFLRPTQ--NRNCKVVVAEGTDVGEFCLQSHAMAR 703
I S A VR ++VLLT+G+S++VE L R +V+V + L+ + R
Sbjct: 403 IVSHAITKVRDNDVLLTYGSSSVVEMILDHAHELGRKFRVIVVDSRPK----LEGQGLLR 458
Query: 704 RLSNSGVSVTVINSSCVFAVMSRVNKV 784
RL G++ T + + + +M V +V
Sbjct: 459 RLVEKGINCTYTHINAISYIMHEVTRV 485
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 36.3 bits (80), Expect = 0.028
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +2
Query: 530 ITSQAREHVRADEVLLTFGASALVERFLRPTQ--NRNCKVVVAEGTDVGEFCLQSHAMAR 703
I S A VR D+VLLT+ +S++VE + +VVV + E A+
Sbjct: 398 IVSHAIAKVRDDDVLLTYASSSVVEMIFDHANELGKKFRVVVVDSRPNNE----GQALLH 453
Query: 704 RLSNSGVSVTVINSSCVFAVMSRVNKV 784
RL G+S T + + + +M V +V
Sbjct: 454 RLVAKGISCTYTHINAISYIMHEVTRV 480
>01_05_0242 + 19828521-19829252
Length = 243
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 388 CRRESPRSGSGDSGPAQHRAFNGSG 462
CRR+ R G+GD PA+ RA G G
Sbjct: 72 CRRDRGRGGAGDGVPAKLRAGRGGG 96
>11_01_0712 -
5844291-5844474,5844722-5844777,5844861-5844959,
5845056-5845137,5845626-5845760,5845844-5846011,
5846127-5846310,5848114-5848189
Length = 327
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 134 VADIRNNKLSGSEQIAEATLTLVEKIISDSNATARELCGVLRAAARRIS-SSLPLELVAI 310
+A R + SG +Q+A +V+ + SD + ++ AAR +S S+LP L A+
Sbjct: 1 MAPRRRARSSGCDQVA-----VVDLVDSDDECKNKRPRRTIKPAARNVSKSALPSGLDAL 55
Query: 311 NMIRRVLR 334
N RR LR
Sbjct: 56 NPNRRTLR 63
>01_02_0048 - 10626467-10627498,10628522-10628617
Length = 375
Score = 29.9 bits (64), Expect = 2.4
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = -3
Query: 456 SVEGTMLCRAGVARTRPWRLS-----PTPSPLWNWSTEALFSSL-MALKTLLIMLIATSS 295
S + T +C A VA WR S P P+ L +T + S + ++ IML+A+
Sbjct: 135 SDDDTFVCAACVAAAHGWRFSYTPTAPPPAALAATTTGGVVSDAPLDIRATRIMLLASRI 194
Query: 294 SGKLELIRRAAARRTPQSSR 235
S L ++R+AAA + R
Sbjct: 195 S--LAVLRKAAAAARATAER 212
>02_05_0599 -
30251708-30251815,30251864-30251984,30252068-30252215,
30252303-30252480,30252587-30252625,30252704-30252799,
30252879-30253030,30253336-30253722,30253836-30253940,
30254083-30254098
Length = 449
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +1
Query: 256 PCGRSSYQLKFTTGACSDQHD*ESFKSHQG*KQSFRRPVPEW*GCRRESPRSGSGDSGPA 435
P G ++ ++ +G S E SH G ++S P G R E+ G SG
Sbjct: 89 PGGVGTFSIRHASGTPSR----EEAGSHGGVRRSAFAFAPALHGARMENAHETGGRSGSR 144
Query: 436 QHRAFNGSGLEGT-NKRSHRRAPYRAGDNEVV 528
HRA + + ++RS + PY A +++ +
Sbjct: 145 AHRAPSTMWQDSAIDQRSIGQTPYEAFNSKTI 176
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 488 IAELRTELETMRSSITSQAREHVRADEVL 574
IAEL EL+T R+ + ++A H + E+L
Sbjct: 409 IAELNNELDTNRTMLDNEAEAHKKLSEIL 437
>03_02_0177 -
6185091-6185355,6185468-6185524,6185725-6186089,
6186180-6186332,6186422-6186655,6190532-6190978,
6191549-6191652,6192240-6192351
Length = 578
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +2
Query: 143 IRNNKLSG---SEQIAEATLTLVEKIISDSNATARELCGVLRAAARRISSSLPLELVAIN 313
++N K++G + +AE ++E S T LC LR + I LPL+ I
Sbjct: 378 LKNVKITGFSATRSLAELICHIMENTTSLECLTLDTLCTQLRCSDGNIDVCLPLDQDVIK 437
Query: 314 MIRRVLRAIR 343
+ L AIR
Sbjct: 438 GVHNSLLAIR 447
>01_06_0209 -
27549615-27550246,27550358-27550452,27553290-27553507,
27553590-27553757
Length = 370
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -3
Query: 426 GVARTRPWRLSPT--PSPLWNWSTEALFSSLMALKTLLIMLIATSSSGKLELIR 271
G+ T P RL T PS WNWST + L LL + GK LIR
Sbjct: 117 GICYTHPERLPGTRQPSGHWNWST-GYYDYEATLVVLLTCCCMHARVGKDGLIR 169
>10_01_0138 + 1657028-1657489
Length = 153
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 559 PHVLPGLTRYGRPHCLQLGTELCDVISYWFPQV 461
P V P L ++ R HCL G E DV+ F +V
Sbjct: 77 PEVAPPLGQHARLHCLARGEEGHDVVEDSFREV 109
>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
Length = 863
Score = 28.3 bits (60), Expect = 7.4
Identities = 9/31 (29%), Positives = 22/31 (70%)
Frame = -3
Query: 195 VSVASAICSEPDNLLFLMSATNLPTVSMCFS 103
+S+ +++C++P N +F++S + T+S F+
Sbjct: 616 ISILTSLCNDPKNCVFIVSGRDRTTLSEWFA 646
>01_07_0374 +
43144861-43144998,43145695-43145794,43146499-43146651,
43147383-43150081
Length = 1029
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 394 RESPRSGSGDSGPAQHRAFNGSGLEGTNKRSHRRAP 501
RE SGS ++G A G G +R HRR P
Sbjct: 709 RELLSSGSSEAGAAAAGGGGGGGDSSGGRRGHRRTP 744
>12_01_0304 - 2299676-2299938,2300493-2300841
Length = 203
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/39 (46%), Positives = 18/39 (46%)
Frame = +1
Query: 361 RRPVPEW*GCRRESPRSGSGDSGPAQHRAFNGSGLEGTN 477
RR P W P GS SGP H A GSGL G N
Sbjct: 32 RRDEPLWIAAATAHPSEGSRGSGP--HAA--GSGLPGPN 66
>04_04_1129 - 31107892-31110246
Length = 784
Score = 27.9 bits (59), Expect = 9.8
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Frame = -3
Query: 414 TRPWRLSPTPSPLWNWSTEALFSSLMALKTLLIMLIATSSSGKLELIRRAAARRTPQSSR 235
T P P P+ W + + L S L + A + ++ ++A P+ +
Sbjct: 30 TGPSPPPPPPAAEWTDTVDYLDESGEVLSSAPGARAAVPGADAT-ILSGSSAHPLPRPAA 88
Query: 234 AVALESLII---FSTSVSVA-SAICSEPDNLLFLMSATNLP 124
A L +L + S+S A SA+ S+PD L L++A++LP
Sbjct: 89 AARLAALALRFRSGPSLSAALSALPSQPDPALLLLAASSLP 129
>03_06_0722 - 35751490-35754357
Length = 955
Score = 27.9 bits (59), Expect = 9.8
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Frame = +2
Query: 95 ELSEKHIETVGKFVADIRNNKLSGSEQIAEATLTLVEKIISDSNATARELCGVLRAAARR 274
+L E + V + A ++ S E A ++++ K S + +A AAA R
Sbjct: 496 KLHENRVTAVSERRAADLADESSVIEAAVNAAVSVLSKGSSSAYLSAASNAAQAAAAAAR 555
Query: 275 ISSSLPLELVA----INMIRRVLRAIRDENR 355
SS+LP EL INM +R+ R+E+R
Sbjct: 556 ESSNLPPELDEFGRDINMQKRMDLKRREEDR 586
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,399,273
Number of Sequences: 37544
Number of extensions: 416659
Number of successful extensions: 1464
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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