Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22o11
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 28 1.2
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 28 1.2
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 28 1.6
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.1
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 27 3.6
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 3.6
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.8
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 6.3
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 8.3
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 106 KYTIAHLLKDLYEEIITTL*SWLEEKTKVVRKRHLILQKPL 228
K +I L+ L EE++TTL + LE K K V R+ L K L
Sbjct: 237 KQSIQLGLRPLSEEVVTTLKNLLEVKDKDVEGRNEALNKIL 277
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 393 ELSNPKLTQTDNSKAEVPKTEAPKTEALKPEAPIPE-ACKSEAPKSEESKIETR 551
E++N + + SK E PK E +PE PE + SE P+S + E++
Sbjct: 222 EVNNLEPVGQNESKQEPPKEENSNVSQEQPEQAQPEVSAASEQPESNPTTTESQ 275
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +3
Query: 372 KQESAQAELS---NPKLTQTDNSKAEVPKTEAPKTEALKPEAPIPEACKSEAPKSEESKI 542
K + ++A+LS N + DN+ A + PE P+ +A KS+ K++ SK+
Sbjct: 485 KSDKSRAKLSSDTNKDSEKNDNNDASLQSAGVASDGESSPETPLTKASKSK--KAKASKL 542
Query: 543 ETRGSKPESAADK 581
SK + K
Sbjct: 543 ANDTSKNANGETK 555
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 441 VPKTEAPKTEALKPEAPIPEA-CKSEAPKSEESKIET 548
VP+ P L P P+PE C E+P S+E+ ET
Sbjct: 130 VPEEPLPGEPPL-PNEPVPETNCHKESPLSDETVSET 165
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +3
Query: 441 VPKTEAPKTEALKPEAPIP----EACKSEAPKSEESKIETRGSKPESAADKP 584
+P+ P T LK + P+P + KS+ + + + +KPE KP
Sbjct: 8 IPRLRGPGTNVLKMKKPLPLHMRTKIREHLNKSDPTVKDDKSAKPELPFGKP 59
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/57 (24%), Positives = 22/57 (38%)
Frame = +3
Query: 369 EKQESAQAELSNPKLTQTDNSKAEVPKTEAPKTEALKPEAPIPEACKSEAPKSEESK 539
+++E Q LS +K V +AP KP P+ AP + +K
Sbjct: 425 KQKEGEQTSLSEKTALSEPENKTPVFSFKAPSATTDKPSPPVSSIFSFNAPSAASTK 481
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 369 EKQESAQAELSNPKLTQTDNSKAEVPKTEAPKTEALKPEAPIPE 500
E +E + ELS L+ ++S P T +T A E+ IP+
Sbjct: 244 EDEEDSDVELSESSLSDDEDSPLRCPSTPV-QTAAAPNESQIPD 286
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 25.8 bits (54), Expect = 6.3
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Frame = +3
Query: 369 EKQESAQAELSNPKL--------TQTDN-SKAEVPKTEAPKTEALKPEAPIPEACKSEAP 521
E+ ES ++E+ PK +++D+ S E +TE+ + + E+ +SE+
Sbjct: 58 EESESEESEVEVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDESESESESESESE 117
Query: 522 K---SEESKIETRGSKPESAADKPQ 587
+ SEE E+ S P S KP+
Sbjct: 118 EESESEEESDESERSGPSSFLKKPE 142
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +3
Query: 375 QESAQAELSNPKLTQTDNSKAEVPKTEAPKTEALKPEAPIPEACKSEAPKSEESK 539
Q Q +S+ K +T +K +VP+ P T+ + + + + K K+++ K
Sbjct: 174 QSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSALSKKKKKRNRKNQKKK 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,011
Number of Sequences: 5004
Number of extensions: 32563
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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