Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22o10
         (466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   1.6  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   4.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   6.5  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 74  LRQTTGSWLILRGTDCNRCVWSTA-SKFCDIRVYCLR 181
           +RQ T S+ +  G  C++C +  A S  C I V C +
Sbjct: 28  IRQGTTSYCLGCGDSCHKCKYGIAMSSACGI-VQCAK 63



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 119 CNRCVWSTASKF 154
           CN+C+  +A KF
Sbjct: 87  CNKCIGCSAEKF 98



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 164 ECHKTLTPCSTH 129
           EC KT  PC  H
Sbjct: 99  ECSKTSNPCLPH 110


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 405 YS*YNKISRTYKNTRTFSNK*N 340
           YS YN  +  Y N   ++N  N
Sbjct: 324 YSNYNNYNNNYNNYNNYNNNYN 345


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 458 LLYHFVLFNN*RIQRHIYIPN 396
           L+Y F   ++ RIQ H + P+
Sbjct: 336 LIYDFFKDSSFRIQHHFFYPD 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,840
Number of Sequences: 438
Number of extensions: 2556
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)