Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22n19
(777 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28943-17|AAK68292.2| 811|Caenorhabditis elegans Clc-type chlo... 29 2.8
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type chlo... 29 2.8
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo... 29 2.8
AF173172-1|AAF13165.1| 811|Caenorhabditis elegans CLC chloride ... 29 2.8
AF003389-4|AAN63407.1| 598|Caenorhabditis elegans Hypothetical ... 29 3.7
AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical ... 29 3.7
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 29 4.9
U97008-13|AAB52303.1| 335|Caenorhabditis elegans Serpentine rec... 28 6.5
AL023856-4|CAC15863.1| 331|Caenorhabditis elegans Hypothetical ... 28 8.6
>U28943-17|AAK68292.2| 811|Caenorhabditis elegans Clc-type
chloride channel protein3, isoform b protein.
Length = 811
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 716 TLLASILKVTRIVSPSTNPTSDSHHLNEQPPLNRFLP 606
T A++ ++ R+ S S T ++H+ PP N FLP
Sbjct: 317 TCSATLFRILRMFSVSAAVTVEAHYQTNFPPQNVFLP 353
>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
chloride channel protein3, isoform a protein.
Length = 1001
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 716 TLLASILKVTRIVSPSTNPTSDSHHLNEQPPLNRFLP 606
T A++ ++ R+ S S T ++H+ PP N FLP
Sbjct: 246 TCSATLFRILRMFSVSAAVTVEAHYQTNFPPQNVFLP 282
>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
chloride channel CLH-3b protein.
Length = 1001
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 716 TLLASILKVTRIVSPSTNPTSDSHHLNEQPPLNRFLP 606
T A++ ++ R+ S S T ++H+ PP N FLP
Sbjct: 246 TCSATLFRILRMFSVSAAVTVEAHYQTNFPPQNVFLP 282
>AF173172-1|AAF13165.1| 811|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 811
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 716 TLLASILKVTRIVSPSTNPTSDSHHLNEQPPLNRFLP 606
T A++ ++ R+ S S T ++H+ PP N FLP
Sbjct: 317 TCSATLFRILRMFSVSAAVTVEAHYQTNFPPQNVFLP 353
>AF003389-4|AAN63407.1| 598|Caenorhabditis elegans Hypothetical
protein F23H11.4b protein.
Length = 598
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 263 PESCPTRHRSCTRRPQRLEWVTRSQRATIWTGRRPCVKAPKIKFSLPSLDTRPTTDA--S 436
P + PT C + EW+T + + RP I +P D+RP+ D+ +
Sbjct: 167 PSNAPTTSPDCD---ELREWLTEEEENESCSSSRPENLNASIPAPIPGDDSRPSIDSEEN 223
Query: 437 WWTRCPK 457
+T CP+
Sbjct: 224 PYTPCPR 230
>AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical
protein F23H11.4a protein.
Length = 1003
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 263 PESCPTRHRSCTRRPQRLEWVTRSQRATIWTGRRPCVKAPKIKFSLPSLDTRPTTDA--S 436
P + PT C + EW+T + + RP I +P D+RP+ D+ +
Sbjct: 167 PSNAPTTSPDCD---ELREWLTEEEENESCSSSRPENLNASIPAPIPGDDSRPSIDSEEN 223
Query: 437 WWTRCPK 457
+T CP+
Sbjct: 224 PYTPCPR 230
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 389 KFSLPSLDTRPTTDASWWTRCPK 457
+F+ L+T PT SWW R PK
Sbjct: 622 RFTSVCLETLPTLKGSWWFRKPK 644
>U97008-13|AAB52303.1| 335|Caenorhabditis elegans Serpentine
receptor, class j protein14 protein.
Length = 335
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 602 DSAEIYSTAAVRLDGGNRSSDSCWATRFLSLS 697
DS +I AA+ +DG N + + WA FL S
Sbjct: 178 DSYDIAFVAALYIDGSNETKNKSWAGIFLLFS 209
>AL023856-4|CAC15863.1| 331|Caenorhabditis elegans Hypothetical
protein Y94A7B.7 protein.
Length = 331
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +1
Query: 4 VIYNMAVLTAVDLTNASRYAIHMHRLEFISR--WR-TRFPHILIDYTLRPASSDDDYYVP 174
VIY +A+ V +T S + + + + F+ + WR R+P +L +YTL A Y
Sbjct: 96 VIYVLAIFKIVPMTIISMFE-NRYFVLFVKKGPWRYLRYPFLLFNYTLALALCIPVYLEA 154
Query: 175 PKLADRALAVKLTFSKRGCE 234
P + A V + C+
Sbjct: 155 PIDQENARRVLFETHSQACK 174
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,414,003
Number of Sequences: 27780
Number of extensions: 408115
Number of successful extensions: 1262
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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