Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22n13
(227 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 27 0.44
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po... 25 1.0
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 24 2.4
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 24 3.1
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 23 5.4
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 23 5.4
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 23 7.2
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz... 23 7.2
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 22 9.5
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 22 9.5
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 22 9.5
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.6 bits (56), Expect = 0.44
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 222 FLLNDKVIYLQNSNKNKLFELSGL 151
FL +V+YL ++NK + FELS +
Sbjct: 374 FLQQSRVLYLFHANKQRHFELSDI 397
>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 1.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 120 TVESQTRAGDEIASFLRYC 64
T+E +AG +I SFL YC
Sbjct: 136 TIEEVHKAGGKIKSFLSYC 154
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 24.2 bits (50), Expect = 2.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 180 KNKLFELSGLSLKSCRHDFVTVESQTRAGDEIASF 76
KNKL + S + L SC + S TR + +S+
Sbjct: 78 KNKLSKESAIQLSSCIRKTLLAPSSTRVPSKNSSY 112
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 23.8 bits (49), Expect = 3.1
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +1
Query: 13 PKLQNTLLLTARHSTHPTVAK-ERSDFVACP 102
P++QNT H THP + SDF + P
Sbjct: 286 PQMQNTTSQPTTHDTHPPKQQGPISDFRSIP 316
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1328
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 222 FLLNDKVIYLQNSNK 178
F L D+V+Y+Q+S K
Sbjct: 1135 FALGDRVVYVQDSGK 1149
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 23.0 bits (47), Expect = 5.4
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = -2
Query: 91 RNRFVPSLLSDVWNVWLLIVACSVT 17
+N P L W ++L++ C++T
Sbjct: 824 KNDNFPEFLLVQWKLYLIVACCTIT 848
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 130 RFCNSRKPNEGRRRNRFVPSLLSDV 56
R C + EGR+ NRF S+L V
Sbjct: 33 RTCLASLTPEGRKNNRFNTSVLLQV 57
>SPBC18H10.15 |ppk23||serine/threonine protein kinase
Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 398
Score = 22.6 bits (46), Expect = 7.2
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +1
Query: 22 QNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKIVSARF*TKPAK 162
Q LL A HPTV + P L + Y +++ PAK
Sbjct: 300 QYFLLPYANKIKHPTVPTHSKIRTSIPNLTGNAYDLLNRLLSLNPAK 346
>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 77 SFATVGCVECLAVNSSVFCNF 15
SF VGC+E ++ S C F
Sbjct: 103 SFDRVGCMELAFISFSAACYF 123
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 82 SDFVACPRLAFDCYKIVS 135
+ FVA P L DC KI S
Sbjct: 230 ASFVASPLLLEDCNKIAS 247
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 22.2 bits (45), Expect = 9.5
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = -3
Query: 183 NKNKLFELSGLSLKS---CRHDFVTVE 112
NKNK+ ELS + KS DF T+E
Sbjct: 550 NKNKILELSKKTAKSKVWNLDDFFTIE 576
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 858,570
Number of Sequences: 5004
Number of extensions: 12792
Number of successful extensions: 49
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 55
effective length of database: 2,087,258
effective search space used: 41745160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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