Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22n13
         (227 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr...    28   0.78 
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr...    28   0.78 
Z82278-8|CAB05251.2|  312|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z50109-5|CAA90438.1|  325|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical ...    26   4.1  
AF016416-7|AAB65272.2|  307|Caenorhabditis elegans Hypothetical ...    26   4.1  
U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter...    25   5.5  
U97002-1|AAY86260.1|  181|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p...    25   9.6  
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ...    25   9.6  
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha...    25   9.6  
AC006695-17|AAF39983.2|  327|Caenorhabditis elegans Hypothetical...    25   9.6  

>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
           protein F46F11.9b protein.
          Length = 1282

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 52  STHPTVAKERSDFVACPRLAFDCYKIVSARF 144
           S H  +A  R    A P L+FDCY++    F
Sbjct: 516 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 546


>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
           protein F46F11.9a protein.
          Length = 1280

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 52  STHPTVAKERSDFVACPRLAFDCYKIVSARF 144
           S H  +A  R    A P L+FDCY++    F
Sbjct: 514 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 544


>Z82278-8|CAB05251.2|  312|Caenorhabditis elegans Hypothetical
           protein M162.8 protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 22  QNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKIVSARF 144
           +N +L+    ++   + +   DF+A P+L  D ++I +A F
Sbjct: 99  KNPVLMRISRNSLNEILRVLEDFLAIPKLEIDHFRIKAAMF 139


>Z50109-5|CAA90438.1|  325|Caenorhabditis elegans Hypothetical
           protein C09H10.7 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 133 TRFCNSRKPNEGRRRNRFVPSLLSDVWNVWLLIVACSVTS 14
           T F +S  PN   R   F P+L S   NV   +++  + S
Sbjct: 246 TMFASSLAPNSAGRTTHFDPTLNSPAENVLSEVISSEIDS 285


>AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical
           protein W07E6.1 protein.
          Length = 664

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 80  RSFATVGCVECLAVNSSVFCNFGG 9
           R  A +G +  L VN++V CN GG
Sbjct: 342 RCRAIIGNLHRLGVNNTVVCNLGG 365


>AF016416-7|AAB65272.2|  307|Caenorhabditis elegans Hypothetical
           protein F29A7.2 protein.
          Length = 307

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 45  QTFHTSDSSEGTKRFRRLPSFGFRLLQNRVCKILN 149
           ++  TSDS  G KR      FGFR   + + ++ N
Sbjct: 78  ESVQTSDSEHGIKRVWLKEGFGFRDWIDHILEVFN 112


>U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 31, isoform a protein.
          Length = 592

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -2

Query: 91  RNRFVPSLLSDVWNVWLLIVACSVTSAAC 5
           R R VP   +  WN W    ACS T  AC
Sbjct: 483 RARAVPE--AGNWNSWSPWTACSATCGAC 509


>U97002-1|AAY86260.1|  181|Caenorhabditis elegans Hypothetical
           protein K09H11.9 protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 132 HDFVTVESQTRAGDEIASFLR 70
           H FV  ESQ    +++ASFLR
Sbjct: 126 HKFVQPESQDYLAEQMASFLR 146


>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 101  GQATKSLRSFATVGCVECLAVNSSVFC 21
            G+ T SL S    GC EC   N +  C
Sbjct: 1267 GEGTFSLDSSNLKGCTECFCFNRTSNC 1293


>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 101  GQATKSLRSFATVGCVECLAVNSSVFC 21
            G+ T SL S    GC EC   N +  C
Sbjct: 1267 GEGTFSLDSSNLKGCTECFCFNRTSNC 1293


>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3102

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 101  GQATKSLRSFATVGCVECLAVNSSVFC 21
            G+ T SL S    GC EC   N +  C
Sbjct: 1267 GEGTFSLDSSNLKGCTECFCFNRTSNC 1293


>AC006695-17|AAF39983.2|  327|Caenorhabditis elegans Hypothetical
           protein W06H8.6 protein.
          Length = 327

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 195 LQNSNKNKLFELSGLSLKSCRHDFVTVESQTRAGDEIASFLRYCRMCGMS 46
           L N++ +KL E + + L+     F TV++  +  D++     YC + GMS
Sbjct: 100 LLNTSLSKLREEANMPLRKHLLIFHTVKTIQKDLDQLDDEELYCSLVGMS 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,757,084
Number of Sequences: 27780
Number of extensions: 72302
Number of successful extensions: 250
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 55
effective length of database: 11,212,298
effective search space used: 224245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)