Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22n06
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    31   0.13 
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    28   1.7  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    27   2.2  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    26   6.7  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    25   8.8  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    25   8.8  

>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = +1

Query: 274 KRRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*I 453
           K +D  ++ +E   T       + +    T +DSR R+        + RKR H       
Sbjct: 144 KLKDRTEASKEESKTVTDHSNRRESRRESTYYDSRERNGKRTSRSTLDRKRFHDA----- 198

Query: 454 QETEKRRFGRRIQHHS 501
            +TE+ R+GR    HS
Sbjct: 199 SDTERNRYGRSPSPHS 214


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
          Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 84 TRVAQTQTFVFRTRTLQRPNTECTQ 10
          TR+ Q   +V R  T + PNTE TQ
Sbjct: 15 TRIVQLDNYVTRLSTEKSPNTEITQ 39


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = -2

Query: 423 FPMNRAAISSDGMTMSTIMLGSWWGGSFVSLPMPSREESFPTALTTVSAFPVFIDDEYDE 244
           F M+   + S    +  +M   W G     +P   +           SA PVF+DDE  +
Sbjct: 42  FSMSSGGLVSALSGLKKLMTFQWLGWCGQEIPEDEKPMIIQRLQDECSAIPVFLDDETAD 101

Query: 243 R 241
           R
Sbjct: 102 R 102


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 348 GSFVSLPMPSREESFPTALTTVSAFPVFIDDEYD 247
           G+   +P+P    +   A   VS+ P F DD++D
Sbjct: 795 GNVTEIPLPPLAVNEKRASVAVSSIPSFGDDQHD 828


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 400 DSGPVHRKRVHRTHHL*IQETEKRRFGRRIQHHSIKRERAQR 525
           DS    ++R HR  H    +   R      QH S KRE ++R
Sbjct: 162 DSDRKSKERRHRDRHHRSNQDRSRERSDNEQHSSDKREHSRR 203


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 135 GGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*IQETPRRLSKPSGTTL 314
           G H   +K      +   SRH+ P    S  +  +R HR H   ++E  RR S+    ++
Sbjct: 123 GRHMAFSKNDGTNLSLPPSRHQSP--PPSSVLASQRHHRRHDSELEEFARRASRSLSFSM 180

Query: 315 HG 320
           +G
Sbjct: 181 NG 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,730
Number of Sequences: 5004
Number of extensions: 59346
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)