Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22n06
(757 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0084 - 25690346-25691206 33 0.19
07_03_0604 + 19903654-19904598 32 0.43
03_06_0762 + 36078414-36078539,36078700-36078750,36078832-360789... 30 2.3
01_03_0060 - 12112595-12113974,12115970-12116077 30 2.3
08_02_0843 - 21759183-21759556,21760255-21762913 29 3.0
03_02_0089 + 5561622-5561855,5562748-5563247,5563411-5563501 29 4.0
06_01_0953 + 7344095-7344444,7344978-7345049,7345136-7345208,734... 29 5.3
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 29 5.3
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610... 28 7.0
09_02_0493 - 9869283-9870001,9870142-9870352,9871639-9871800 28 9.2
08_01_0876 - 8598664-8599374 28 9.2
02_04_0551 + 23801464-23801802 28 9.2
>02_05_0084 - 25690346-25691206
Length = 286
Score = 33.5 bits (73), Expect = 0.19
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = -3
Query: 239 FPMNRAAISSDGMTMSTIML-GSWWGGSFVS-LPMPSREESFPTALTTVS-VFPRHVSLK 69
+P AA+ GM ST G GG ++ LP SR +S TA + P H+S +
Sbjct: 197 YPPPPAAVGGVGMFHSTTTTTGGMLGGMALAVLPWVSRGQSPATAAASAYYTSPYHMSPR 256
Query: 68 LRRSYFEPER 39
LRR + E ER
Sbjct: 257 LRRQHMEVER 266
>07_03_0604 + 19903654-19904598
Length = 314
Score = 32.3 bits (70), Expect = 0.43
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +3
Query: 192 RHRHPVAADSGPVHRKRVHRTHHL*IQETPRRLSKPSGTTLHGRASAKKQNCRP 353
R R P + PVHR R R HH ++ ++ S HGR + Q RP
Sbjct: 83 RRRRPRRVEGAPVHRAR--RLHHRRVRRRRVHVAVRSSRRRHGRRGEEGQGRRP 134
>03_06_0762 +
36078414-36078539,36078700-36078750,36078832-36078981,
36079055-36079803,36079914-36080013,36080116-36080259,
36080333-36080452,36080532-36080846
Length = 584
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +1
Query: 346 AAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*IQETEKRRFGRRIQHHSIKR 510
AAPP + HD H HP V +R+ + + E +K+ H + R
Sbjct: 25 AAPPPSSHDDAHPHPHPQSRRTVPARRLRQRLEQEVSELKKQLRNEEAVHDILNR 79
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = +3
Query: 162 AAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*IQETPRRLSKPSGTTLHGRASAKKQ 341
AAPP + HD H HP V +R+ + + E ++L +H + Q
Sbjct: 25 AAPPPSSHDDAHPHPHPQSRRTVPARRLRQRLEQEVSELKKQLRNEE--AVHDILNRALQ 82
Query: 342 NCRPTKN 362
+ TK+
Sbjct: 83 HSNTTKS 89
>01_03_0060 - 12112595-12113974,12115970-12116077
Length = 495
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +1
Query: 340 KTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*IQETEKRRFGRRIQH 495
+ A R D++H P GP HR + HHL E KR + R H
Sbjct: 74 RVPASVRDSVDNKHYEPRLVSIGPYHRSK----HHLRAMEDRKRLYLLRFLH 121
>08_02_0843 - 21759183-21759556,21760255-21762913
Length = 1010
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +2
Query: 269 TGNAETVVKAVGNDSSREGIGKETKLPPHQEPNMIVDIVIPSLLIAALFIGNAFIVLII- 445
+GNA+ + NDSS G + + + + + +++ ++F G AF++L +
Sbjct: 622 SGNADLCISCHENDSSCTGSNVLRPCGSMSKKSALTPLKVAMIVLGSVFAG-AFLILCVL 680
Query: 446 --YKYRKRKNDDL 478
Y ++ + N DL
Sbjct: 681 LKYNFKPKINSDL 693
>03_02_0089 + 5561622-5561855,5562748-5563247,5563411-5563501
Length = 274
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 271 RKRRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDS 375
R RR GC+ RR+ G RQ T APP + S
Sbjct: 42 RGRRRGCRPRRQLDAAGDVRQHLHTGAPPSRRRAS 76
>06_01_0953 +
7344095-7344444,7344978-7345049,7345136-7345208,
7345323-7345347,7345882-7345921,7346201-7346270,
7346475-7346558
Length = 237
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 183 HDSRHRHPVAADSGPVHRKRVHRTHHL*IQ-ETPRRLSKPSGTTLHGRASAKKQ 341
H + R P A P +VHR+H L ++ E + G L GR +KQ
Sbjct: 15 HRTSRRSPPARRKDPFSPPKVHRSHKLLLEIEALMEVELEGGNALGGRHRWRKQ 68
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = -3
Query: 200 TMSTIMLGSWWGGSFV-----SLPMPSREESFPTALTTVSVFPRH 81
T S L SW+ G+ + +LP PSR+ S P L VF H
Sbjct: 431 TASDTRLSSWYDGNCLLKAIDTLPPPSRDVSKPLRLPICDVFSSH 475
>10_02_0167 -
6100676-6102111,6102174-6102708,6102967-6103975,
6104006-6105036
Length = 1336
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +1
Query: 274 KRRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHR 435
+RRD + +RE GH RN+T P S ++D P R R R
Sbjct: 115 RRRDNSERQREDSRDPGHHPRNRTLEPSDPSSSSSSASSSSSDRHP-RRSRDRR 167
>09_02_0493 - 9869283-9870001,9870142-9870352,9871639-9871800
Length = 363
Score = 27.9 bits (59), Expect = 9.2
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Frame = +3
Query: 48 FEIRTSEFERHVSWKNRDG-CQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSG 224
F +R + E DG C + + GG+ + A ++ R VA S
Sbjct: 66 FSMRANITEPSYRTVKLDGICSTFVSSVLAGGYTYTGEVATTDGDAKENAAR--VAIKSI 123
Query: 225 PVHRKRVHRTHHL*IQETPRRLSKPSGTTLHGRASAKKQNCRP 353
V V R++H+ ++ R +KP+GTT+ G S+++ + P
Sbjct: 124 LVDIIAVTRSNHM-LESI--RSNKPTGTTIQGEQSSQQTSAHP 163
>08_01_0876 - 8598664-8599374
Length = 236
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 460 TEKRRFGRRIQHHSIKRERAQR 525
T +RR R++H S+KRER +R
Sbjct: 191 TRRRRCRLRLRHRSMKRERVER 212
>02_04_0551 + 23801464-23801802
Length = 112
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = +1
Query: 271 RKRRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHH 444
R+R RR+R GG R + + D P DSG +R R+ T++
Sbjct: 41 RRREPRPWRRRQRGAAGGGRTWTTCGEVEQRRWDGNGEFPALVDSGCAYRARIRPTNN 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,176,452
Number of Sequences: 37544
Number of extensions: 424022
Number of successful extensions: 1499
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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