Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22n02
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    28   1.2  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    26   4.7  
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    26   4.7  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   8.2  

>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 558 DEXSRVFIVKNEQNIEYLXANKYYAFHSDSVDNFEFENDS 677
           D+ S+VF +  +Q I  L       +HS SV    F NDS
Sbjct: 201 DQTSKVFDLSTQQCITRLGRRGVDGYHSHSVKQVNFCNDS 240


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 687 AFFCYRFQTQNYQRYRY 637
           +FFC+R Q Q+  +YRY
Sbjct: 155 SFFCFRRQIQHMLKYRY 171


>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +3

Query: 549 VRRDEXSRVFIVKNEQNIEYLXANKYYAFHSDSVDNFEFENDSKKMLXN 695
           +RR+   +  +  + Q    L  NK   F S    NF F N S K   N
Sbjct: 171 LRRNTSKKSSLSDSSQKENTLTLNKENEFSSKDDSNFAFHNSSTKTTIN 219


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 128 FVDXRFDQRLEQRHVNQLFKLIHINYINPMRIWC 27
           F   RF+Q+  +R   +   L + N I PM+++C
Sbjct: 586 FKSYRFNQQFVERVPLKYRSLTYSNKIEPMKVFC 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,051,269
Number of Sequences: 5004
Number of extensions: 33188
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)