Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22n02
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U68266-1|AAB16981.1|  219|Caenorhabditis elegans RAB-3 protein.        28   5.8  
U68265-1|AAB16980.1|  219|Caenorhabditis elegans RAB-3 protein.        28   5.8  
U28944-15|AAK68196.1|  219|Caenorhabditis elegans Rab family pro...    28   5.8  
U28944-14|AAK68195.1|  233|Caenorhabditis elegans Rab family pro...    28   5.8  
AB112928-1|BAD07033.1|  219|Caenorhabditis elegans Rab3 protein.       28   5.8  

>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 306 IESSFDKNHIVAKLCDATRAKEWQTMS 386
           +ES++DK H + + C  T + +W T +
Sbjct: 131 VESAWDKTHQLFECCGVTNSSDWLTFT 157


>U68266-1|AAB16981.1|  219|Caenorhabditis elegans RAB-3 protein.
          Length = 219

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = +3

Query: 51  IINMDQFEQLINVSLLXSLIKTXIDEXVSDNIKSMSEKLKXLECDNLTDSVE 206
           +++MD+  QL +  L     +T   E +  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U68265-1|AAB16980.1|  219|Caenorhabditis elegans RAB-3 protein.
          Length = 219

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = +3

Query: 51  IINMDQFEQLINVSLLXSLIKTXIDEXVSDNIKSMSEKLKXLECDNLTDSVE 206
           +++MD+  QL +  L     +T   E +  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U28944-15|AAK68196.1|  219|Caenorhabditis elegans Rab family
           protein 3, isoform b protein.
          Length = 219

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = +3

Query: 51  IINMDQFEQLINVSLLXSLIKTXIDEXVSDNIKSMSEKLKXLECDNLTDSVE 206
           +++MD+  QL +  L     +T   E +  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U28944-14|AAK68195.1|  233|Caenorhabditis elegans Rab family
           protein 3, isoform a protein.
          Length = 233

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = +3

Query: 51  IINMDQFEQLINVSLLXSLIKTXIDEXVSDNIKSMSEKLKXLECDNLTDSVE 206
           +++MD+  QL +  L     +T   E +  N+K++ EKL  + CD + +S++
Sbjct: 158 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 206


>AB112928-1|BAD07033.1|  219|Caenorhabditis elegans Rab3 protein.
          Length = 219

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = +3

Query: 51  IINMDQFEQLINVSLLXSLIKTXIDEXVSDNIKSMSEKLKXLECDNLTDSVE 206
           +++MD+  QL +  L     +T   E +  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,417,399
Number of Sequences: 27780
Number of extensions: 188883
Number of successful extensions: 535
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)