Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22m16
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 34 0.019
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 28 1.3
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr... 27 2.9
SPBC216.06c |swi1||replication fork protection complex subunit S... 27 2.9
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|... 26 5.0
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb... 26 6.7
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 26 6.7
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 25 8.8
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.8
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 34.3 bits (75), Expect = 0.019
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Frame = +2
Query: 413 YSLNSTSSTEYKISDVVMTMIFLLRSEKYHSLFKL--LETTFDDYTCRPQMTQVQTDTLL 586
YSL + ++ + + L E Y L L LE D C P + Q DT+L
Sbjct: 1089 YSLLDIPESLNHLTHFLQVSVMGLEDEHYIKLVSLSILEKLVD---CSPSIIDEQVDTIL 1145
Query: 587 DAVRSLLEMPSTTVDLTT-----VDIMRSSFARCF 676
+A+R ++E+ T L T +D++RS+ F
Sbjct: 1146 EALRKIIELRKTEKTLKTDSDNILDLVRSALRVLF 1180
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +2
Query: 551 PQMTQVQTDTLLDAVRSLLEMPSTTVDLTTVDIMRSSFARCFNSPIMKYAKIV 709
PQ+T++ + D VR T+D ++++I +S+F +K A ++
Sbjct: 182 PQVTELLATVIADLVRGEFLQLKNTMDPSSLEIKQSNFDYYIEKSFLKTASLI 234
>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 514
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/63 (20%), Positives = 26/63 (41%)
Frame = +2
Query: 446 KISDVVMTMIFLLRSEKYHSLFKLLETTFDDYTCRPQMTQVQTDTLLDAVRSLLEMPSTT 625
K D+ + K+ L +++ DY Q+ ++ D LLD R+ +
Sbjct: 438 KDQDITYICLSTAHPAKFDKAVNLALSSYSDYNFNTQVLPIEFDGLLDEERTCIFSGKPN 497
Query: 626 VDL 634
+D+
Sbjct: 498 IDI 500
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +1
Query: 556 NDAGSNGHAVGRRAISVGDAFDHSRLDDRRYYAVVVCTLFQQSDYEI 696
N+ G++G +G+ D+F+ + L D ++ ++ F++SD I
Sbjct: 749 NEGGNDGERMGKNLKGDTDSFNTALLKDGKFRLLLELCGFEESDNNI 795
>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 348
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 383 RNAARKLIHHYSLNSTS 433
R RKL+HH SLN+ S
Sbjct: 65 RKPTRKLVHHISLNNVS 81
>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +2
Query: 11 SSVTMSAIALYLEINKLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINF 172
S+ ++ + L ++ + D +Q AI+ +PL CD+ + L+T + I F
Sbjct: 119 STTSLDQLKLAIKEKVQVWRSDASLQKAIYIYTYPLACDKGKKT-LSTSIAIEF 171
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 480 CCDRKSIIRCSNCSKPRL--TTTRADRK*RRFKRTRCWTPCDLC 605
C D K ++C C KP L + +D + ++CWT C C
Sbjct: 369 CYDNKYAVKCKKCRKPILGISVKGSDGE----YHSQCWT-CGAC 407
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 25.4 bits (53), Expect = 8.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 119 LCDEHQNVQLNTDVLINFI 175
+CD H+N N D+L F+
Sbjct: 387 ICDLHENTSFNIDILPGFL 405
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 8.8
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +1
Query: 394 SQTNPSLFVEQHQFYRIQNQRRGHDHDIFAAIGKVSFVVQTARNHV*RLHVQ--TANDAG 567
SQ+ PSL VEQ++ + I N+ + + + + QTA H+ +Q T D
Sbjct: 165 SQSPPSLDVEQNKPFSISNEPVEQETENSSTKDLQVYDFQTASEHLPEQSLQNTTYYDPS 224
Query: 568 SNGHAVGRRAISVGDAFDHSRLD 636
+V I G + H +LD
Sbjct: 225 KTYSSVNFEEIEYGKS--HEKLD 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,816,164
Number of Sequences: 5004
Number of extensions: 52752
Number of successful extensions: 187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -