Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22m15
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1170 - 9318332-9318461,9318551-9318613,9318694-9318744,931...    30   1.7  
01_06_0619 - 30650665-30651138                                         30   2.2  
02_02_0326 - 8976913-8976963,8977453-8977521,8978247-8978438,897...    29   3.9  
05_01_0120 - 828834-831143                                             28   9.1  
04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294...    28   9.1  

>01_01_1170 -
           9318332-9318461,9318551-9318613,9318694-9318744,
           9318837-9318921,9319005-9319068,9319139-9319340,
           9319808-9320502
          Length = 429

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 538 VAVVDNGGSVANSRFGGEMQNSRQLTPTKPVPGC 437
           V V+DNGG +  + FGG+M       PT  VP C
Sbjct: 7   VVVLDNGGGLLKAGFGGDM------NPTAVVPNC 34


>01_06_0619 - 30650665-30651138
          Length = 157

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 547 RRDVAVVDNGGSVANSRFGGEMQ-NSRQLTPTKPVPGCN*GLVNRRRSQS 401
           RR+V VV   G V     GG++Q  SR+ TPT      N G V RR  +S
Sbjct: 14  RREVVVVAGAGGVEPHPSGGDVQIGSREATPT-----VNPGTVKRRAMRS 58


>02_02_0326 -
           8976913-8976963,8977453-8977521,8978247-8978438,
           8978597-8978764,8978902-8979513,8979765-8979815
          Length = 380

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -3

Query: 364 TRIAGHDDLTPDAGGWV--GVQRIRFVGGRPTVVLTDPEIVLYNS 236
           + +  HD++   AG +V  GV +IR  GG PT+     +I L+ S
Sbjct: 105 SELLSHDEIIRVAGLFVTSGVDKIRLTGGEPTIRKDIEDICLHLS 149


>05_01_0120 - 828834-831143
          Length = 769

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 281 PATDEPDPLNTDPSASIWSKIVVPGDSSEGPIHNA 385
           P+T  P  L   P++S +S  +VP  SS  P+H +
Sbjct: 528 PSTSSPTSLGLSPASSNFSHTLVP--SSRSPLHQS 560


>04_04_1374 -
           33028790-33028951,33029033-33029087,33029402-33029466,
           33029558-33029701,33029825-33029878,33029971-33030220,
           33030340-33030446,33031206-33031216,33032682-33032796,
           33032897-33033005,33033088-33033203,33033288-33033647
          Length = 515

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 299 DPLNTDPSASIWSKIVVPGDSSEGPIHN 382
           DPL T  SAS+ + + +PG +S  P  N
Sbjct: 41  DPLPTTTSASVTAPLELPGATSASPARN 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,307,386
Number of Sequences: 37544
Number of extensions: 443361
Number of successful extensions: 1043
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)