Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22m07
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1449 - 27174451-27178005                                         31   1.0  
09_06_0122 + 20990754-20991263,20992635-20992748                       29   4.2  
06_01_0726 + 5319809-5319839,5319918-5319976,5320859-5320927,532...    29   4.2  
07_03_1002 - 23229298-23231471,23235866-23237777                       29   5.6  
02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952...    29   5.6  
06_01_0850 - 6472213-6473541,6474229-6474282,6474616-6474671,647...    28   7.4  
12_01_1035 + 10656345-10656347,10656694-10656864,10656922-106577...    28   9.7  
04_01_0296 + 3927741-3927960,3928257-3928900                           28   9.7  

>08_02_1449 - 27174451-27178005
          Length = 1184

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 156 CNSNSCE*MPSALKEHVHYLLNQNSWSKINI*NDLFPE 43
           CN  S E  P   K H+HYL N   W    + + +FPE
Sbjct: 838 CNG-SLEIFPKLKKMHLHYLPNLEKWMDNEVTSVMFPE 874


>09_06_0122 + 20990754-20991263,20992635-20992748
          Length = 207

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
 Frame = -2

Query: 639 AAVVYYYRQSA*PCPRPVD-------TIGTDACCYLIAAPHTFAHHSNPRTRRRTKNRHC 481
           A+  Y+ +Q   P P P+D         G D C    AAP       + R RR  KNR  
Sbjct: 76  ASASYHQQQHHLPAPAPLDGAILPARRFGLDMCAAAAAAPAGVPAAGDRRKRRMIKNRE- 134

Query: 480 PLTRSRS 460
              RSR+
Sbjct: 135 SAARSRA 141


>06_01_0726 +
           5319809-5319839,5319918-5319976,5320859-5320927,
           5321009-5321071,5321360-5321419
          Length = 93

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +3

Query: 216 QLKHLVGSTST-NIFKFVKPQFRFVCNRTTVDILEFDTRMYIKPGTHVYATNLFTSNPRK 392
           Q K +V   ST N  +  + +F+   N   + I++F  R   +    +Y  + F+ NP +
Sbjct: 8   QKKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPNPDE 67

Query: 393 MMAFLYAEFG 422
           ++  LY  FG
Sbjct: 68  LIIDLYNNFG 77


>07_03_1002 - 23229298-23231471,23235866-23237777
          Length = 1361

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 339 KPGTHVYATNL-FTSNPRKMMAFLYAEFGKVFKNKIFVNINNYGCVLAGSAGFLFD 503
           KP  HV+A  L   +NP         EFG +  N + V++N+   + A +AG+  D
Sbjct: 150 KPSNHVFAVELDIITNP---------EFGDIDSNHVGVDVNSLRSLQAKTAGYYVD 196


>02_02_0372 +
           9522751-9522964,9523043-9523255,9523471-9523555,
           9524373-9524448,9524974-9525150,9525473-9525566,
           9526357-9526466,9526568-9526657,9526752-9526832,
           9528468-9529277,9530777-9530896
          Length = 689

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 138 RNYLNCTFDLLDDAVLMNYFNYLQSMQLKHL 230
           +NY N   D L+DA L+ +  YLQ   +K L
Sbjct: 592 KNYSNALCDKLEDAKLVQHSRYLQLSAMKSL 622


>06_01_0850 -
           6472213-6473541,6474229-6474282,6474616-6474671,
           6474824-6476012
          Length = 875

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +3

Query: 243 STNIFKFVKPQFRFVCNRTTVDILEFDTRMYIKPGTHVYATNLFTSNPRKMMAFL--YAE 416
           S N+ K VKP   F+  +  +D  +      +    ++Y++ LFTSNP K+   +    E
Sbjct: 660 SANLDKVVKPNLAFL-KQCGIDARD------VASNPNLYSSRLFTSNPMKLRDAVARVEE 712

Query: 417 FGKVFKNKIF 446
            G V  +++F
Sbjct: 713 LGMVRGSRVF 722


>12_01_1035 +
           10656345-10656347,10656694-10656864,10656922-10657728,
           10657881-10659092
          Length = 730

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 81  SYFDLKDNEHVPSEPMAFIRNYL-NCTFDLLDD-AVLMNYFNYLQSMQLKHL 230
           S F    +E +P E    ++ Y+  C   L+DD  +LMN++N L  M   HL
Sbjct: 146 SSFPQTRDESIP-EAWERLQEYVATCPHHLMDDWLILMNFYNGLTPMSHDHL 196


>04_01_0296 + 3927741-3927960,3928257-3928900
          Length = 287

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +3

Query: 534 MCAAPRLDNNMHPFRLYLLGEDMAKHFVDNNILPPHPSNAKTRKINNSMFMLKNFYK-GL 710
           + A P +D N      YL+   + KH VD +++   P       + N+ + L NF+K  +
Sbjct: 140 LAACPCIDKN------YLVQGHILKHGVDGSLIYFFPGCTNEIPLPNAGYHLYNFHKLTI 193

Query: 711 PLFKLKYTVVNSTKIVTR 764
           PL  ++ + V  T   TR
Sbjct: 194 PLHIIEESRVGGTYRETR 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,311,818
Number of Sequences: 37544
Number of extensions: 473964
Number of successful extensions: 1147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)