Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22m06
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    27   3.3  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   4.3  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    26   4.3  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    26   5.7  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   7.5  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   9.9  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    25   9.9  

>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 428 ITRHPS-KRLIWSGLFRRSIDGHTPR 354
           I +HP  KRL W+GL +R++    PR
Sbjct: 459 IQKHPFFKRLHWNGLRKRAVPPFVPR 484


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 332 PAQKLYLHGEYVRQWTYETIRTRSDVWKD 418
           P+ K+Y+H E  R    E ++  SD W++
Sbjct: 854 PSMKVYMHYEEARNALTERLQAISDDWEE 882


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 24/107 (22%), Positives = 48/107 (44%)
 Frame = +1

Query: 154 DYSQIVDRDNNSASIGVELSSGHVVNMLEVRRGVMRRACDRLGWPAVACALLIACARTYA 333
           +Y + + R      +GV+L++G +    +  + V+   CD + +  + C   I       
Sbjct: 291 NYEREMMRGGRRGILGVQLATGKLWQATKTAQ-VIAEQCDGVDFLDLNCGCPI------- 342

Query: 334 GTEVVPARGVCPSMDLRNNPDQIRRLEGCRVIEGQLSIVLMERATNK 474
             ++V  +G   S+ L N    +R L+G   + GQ+ + +  R  NK
Sbjct: 343 --DLVFRQGAGSSL-LENPGRLLRNLQGMDAVSGQIPVTVKLRMGNK 386


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -1

Query: 479 NILFVARSIRTILS*PSITRH 417
           +I F+ RSI+T+LS P +TR+
Sbjct: 436 DIEFILRSIKTMLSWPRLTRN 456


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 501 LREAHVVEYFICGPLHQNDTELTLDHPTSFQTSDLVRIVS*VH 373
           LR A +  +  C PL  N  + T+ H TS  +S++ R ++ +H
Sbjct: 118 LRAAEMEVFQSCQPLAVNTADTTVSHSTS--SSNVPRSLNKIH 158


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 31  WFVCCPLSIACLQLCCY 81
           W   C +SI  L LCCY
Sbjct: 801 WNEACHVSIHSLMLCCY 817


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -3

Query: 288 GPAKTVTGAPHHATPHLQHVDHMTRAEL 205
           G  K +TG   H TP L H  H  RAEL
Sbjct: 838 GRPKVITGWVTHTTPVLLH--HNERAEL 863


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,780
Number of Sequences: 5004
Number of extensions: 55120
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)