Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22m06
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0562 + 25003246-25003746,25004975-25005214,25005576-250060... 30 1.5
03_01_0245 + 1916718-1917443,1917534-1917719 30 1.9
06_03_0025 - 15577231-15577420,15577682-15577813,15578025-155781... 29 4.5
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 29 4.5
12_01_0395 - 3117315-3118117,3118354-3118478,3118558-3118770,311... 28 5.9
10_07_0132 + 13263577-13263732,13265391-13265456,13265607-132657... 28 5.9
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116... 28 5.9
11_03_0090 - 9797967-9798814,9798931-9799312 28 7.8
10_08_0003 - 13992276-13992311,13992461-13992598,13992682-139928... 28 7.8
07_03_1472 - 26753070-26753177,26753254-26753531,26753691-267538... 28 7.8
04_04_0885 - 29086426-29086767 28 7.8
03_02_0854 - 11789850-11790524,11790602-11791063,11793119-11793328 28 7.8
>11_06_0562 +
25003246-25003746,25004975-25005214,25005576-25006097,
25006184-25007248,25007350-25007656,25007761-25008001,
25008104-25008302,25008771-25008852,25008959-25009209,
25010061-25010219,25010220-25010603
Length = 1316
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -1
Query: 359 PRAGTTSVPAYVRAQAISRAHATAGQPRRSQARLITPRRTSSMLTT*PELSST 201
P A TSV RA A + A G PRR+ A P ++M + P S+T
Sbjct: 98 PPAAVTSVQGAPRAPASTAATVPQGSPRRTVAAQSAPSGAAAMAQSAPGGSAT 150
>03_01_0245 + 1916718-1917443,1917534-1917719
Length = 303
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 362 TPRAGTTSVPAYVRAQAISRAHATAGQPRR-SQARLITPRRTS 237
TPR TT YVR ++ +A G+ RR ++ TPRRT+
Sbjct: 134 TPRTPTTQRACYVRGTGTAQGNAKLGRRRRWLRSTGQTPRRTA 176
>06_03_0025 -
15577231-15577420,15577682-15577813,15578025-15578173,
15579012-15579071,15593208-15593297,15593604-15593871,
15594517-15594608,15595355-15595441,15597333-15597440,
15597709-15597822,15598253-15598420,15599442-15599579,
15599699-15599908,15600986-15601237,15601965-15602111,
15603327-15603443
Length = 773
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -3
Query: 627 YYKSEILEELHPSHHGEVWEQITKIAQALSSIYQYIAGNFP*LREAHVVEYFIC 466
Y K+ +EE S G V+ + I LS+I + + G+ P + HVVE C
Sbjct: 466 YMKTFYMEESTFSFSGNVYVGQSDIFDTLSNIRKKLKGDCPREKIVHVVEKLHC 519
>06_01_1032 +
8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 393 GPDQTFGRMSGDRGSAQYRSDGAGHK*NIRQHELPAVKG 509
GP + G +G RGS +DG+G K N E PA+ G
Sbjct: 510 GPPASEGGSAGQRGSESRMADGSG-KENGNSQENPAIFG 547
>12_01_0395 -
3117315-3118117,3118354-3118478,3118558-3118770,
3118850-3120076,3120537-3120622,3121197-3121223
Length = 826
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = -1
Query: 395 SGLFRRSIDGHTPRAGTTSVPAYVRAQAISRAHATAGQPRRSQARLITP---RRTSSML 228
S L S+ + + T +P + + + AH G PR S RLI RR SSML
Sbjct: 143 STLHENSVARNVSSSANTGLP--MDSNCVPSAHIDIGNPRDSSVRLILTGENRRESSML 199
>10_07_0132 +
13263577-13263732,13265391-13265456,13265607-13265705,
13267020-13267084,13267210-13267294,13267389-13267422,
13267539-13267642,13268085-13268408,13269090-13269605
Length = 482
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +1
Query: 508 EVTGYILIYRTKGLRNLGDLFPNLTVVRGMQLFKDFALVIFDNE 639
E +G + ++ KG++NL P++ +V G+ F ++FD +
Sbjct: 234 EASGLLAVF--KGMKNLPVGMPSVLIVTGLTWLSWFPFILFDTD 275
>09_06_0076 +
20710482-20710670,20711313-20711547,20711664-20711689,
20712000-20712293,20712603-20712728,20712827-20712896,
20712992-20713182,20713394-20713519,20713878-20714279,
20714364-20714758,20714861-20715315,20715403-20715524,
20715653-20715693,20716026-20716129,20716363-20716576,
20717667-20717780,20718576-20718612
Length = 1046
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -2
Query: 493 SSCCRIF--YLWPAPSERY*ADPRSPDILPNV*SGPDCFVGPLTDILPVQ 350
SSCC + Y W A ER + D LPN C DILPV+
Sbjct: 766 SSCCPVTGEYSWVANMERIMKENAIMDELPNKSQVNKCAPKQKVDILPVK 815
>11_03_0090 - 9797967-9798814,9798931-9799312
Length = 409
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 306 QSARHRGPAKTVTGAPHHATPHLQHVDHMTRA 211
+ R+ P+ G HH PHLQ + + RA
Sbjct: 50 KEGRYLVPSAVAIGPYHHDLPHLQEAEEVKRA 81
>10_08_0003 -
13992276-13992311,13992461-13992598,13992682-13992852,
13992926-13992989,13993404-13993552,13993700-13993753,
13993894-13994034,13994134-13994412,13994518-13994743,
13995328-13995734
Length = 554
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +3
Query: 324 HIRRHRSCTCTGSMSVNGPTKQSGPDQTF--GRMSGDRGSAQYRSDGAG 464
H+RRH + GP + GP + F +GD G+A DG G
Sbjct: 37 HLRRHPLAAAAAATRGRGPLLRLGPRRPFSASASAGDNGAAA-GGDGGG 84
>07_03_1472 -
26753070-26753177,26753254-26753531,26753691-26753865,
26754974-26755468
Length = 351
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 166 IVDRDNNSASIGVELSSGHVVNMLEVRRGVMRRACDRLGW 285
+ RD S ++ + +G VV R +RRA D GW
Sbjct: 61 VTTRDETSVAMPMSFMTGSVVGKRFYREATVRRADDGNGW 100
>04_04_0885 - 29086426-29086767
Length = 113
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 347 TTSVPAYVRAQAI-SRAHATAGQPRRSQARLITPRRTS 237
T + +Y R A + AH A + R S AR+ PRRTS
Sbjct: 12 TLARSSYTRTGASRTAAHGPADRQRESHARMGVPRRTS 49
>03_02_0854 - 11789850-11790524,11790602-11791063,11793119-11793328
Length = 448
Score = 27.9 bits (59), Expect = 7.8
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = +3
Query: 216 GSC--GQHAG---GAAWRDEARL*PSWLARGGVRSADSLRTHIRRHRSCTCTGSMSVNGP 380
GSC G HAG GA W R RGG R S R RR R +G S
Sbjct: 11 GSCSSGGHAGAGRGAGWAPRRRD----RRRGGPRRGRSTRASSRRGRRRPRSGYQSRVSR 66
Query: 381 TKQSGPD 401
+Q GP+
Sbjct: 67 AEQVGPE 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,743,293
Number of Sequences: 37544
Number of extensions: 404358
Number of successful extensions: 1087
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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