Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22m05
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 33 0.034
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 30 0.31
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ... 29 0.73
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 29 0.96
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 28 1.7
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 28 1.7
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/... 28 1.7
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 28 1.7
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 6.8
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 9.0
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 33.5 bits (73), Expect = 0.034
Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 6/159 (3%)
Frame = +2
Query: 287 EEENYKMYMDSLQK--HQLESEYHTQISMEQLHQAMQSSLNNSGIVHNFQLPLSPRQMST 460
E+ +Y+ + L++ ++LES + E+ + SSL QL + S
Sbjct: 661 EQTSYQRSLIRLEQLTNELESLKSISRNKEKKFEEAISSLQLEKSNIQLQLTSLTSERSL 720
Query: 461 LMLKTNHLSRSLNFNETIHPQRDEID-LHQNLRHEEALRNLDVTLFRNELELQNN-LSQA 634
+ K N L +SL +E +DE+D +++L+ + A + ++V ++L + N+ L Q+
Sbjct: 721 ALEKLNDLEKSLVLSER---SKDELDESYKSLQEQLASKKIEVQNVSSQLSICNSQLEQS 777
Query: 635 --LVQNLSEQDLRNLDLSRINEVQLQNLRTDIPLHHESN 745
+V NL ++L + + L NL + + + N
Sbjct: 778 NHIVDNLKSENLLLTSVKDKLKADLSNLESKLSSLQQDN 816
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 30.3 bits (65), Expect = 0.31
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +2
Query: 218 QLSSLNAEWFLKMDFVKREEHNAEEENYKMYMDSLQKHQLESEYHTQISMEQL--HQAMQ 391
QL S N W L D V+ EE+N+ ++++ L+ + Y +S+ + H +
Sbjct: 315 QLLSKNRNWVLMRDIVQLEEYNSYLLDHRIVSAFLKPLSEKGNYKDILSLISVWQHSVWR 374
Query: 392 SSLNNSGIVHNFQL 433
SL +V++F +
Sbjct: 375 PSLAYLQVVYSFSM 388
>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 200
Score = 29.1 bits (62), Expect = 0.73
Identities = 37/180 (20%), Positives = 77/180 (42%), Gaps = 12/180 (6%)
Frame = +2
Query: 248 LKMDFVKREEHNAEEENYKMYMDSLQKHQLESEYHTQISMEQLHQAMQSSLNNSGIVHNF 427
L++ +K+ +A+++N + L L + S EQL QA + + + N
Sbjct: 21 LRIHELKQHSRDADDQNPEQIKRQLMSKLLILREANRKSYEQLVQAKTITAEHKSELDNA 80
Query: 428 QLPLSPRQMSTLMLKTNHLSRSLNFNETIHPQRDEIDLHQNLRHEEALR-----NLDVTL 592
++ L Q L LKT + ++ E I+ + + L+ + +L + +
Sbjct: 81 RIRLQALQYKKLHLKT--IIKNYEEKEHIYTALPLVSKEEFLKEHPEFKSSNDHDLMLAI 138
Query: 593 FRNELELQNNLS---QALVQN----LSEQDLRNLDLSRINEVQLQNLRTDIPLHHESNVS 751
+EL+ + LS Q L++ +SE + L + +E LR+ +P+ N++
Sbjct: 139 LEDELKERQRLSTLKQELLKRKAALISENKAKRNALQKGDEKLQTFLRSSVPVQEYYNIT 198
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 28.7 bits (61), Expect = 0.96
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 MDFVKREEHNAEEENYKMYMDSLQKHQLESEYHTQI---SMEQLHQAMQSSLNNSGIVHN 424
+ F ++ N +EN+ ++ ++ +S I + E+ + S+L G++ +
Sbjct: 435 LKFYAKKVANVSDENFPIFATAITGRPYKSLKSLPIGGPNHEEEQKKFISALQKGGMLQS 494
Query: 425 FQLPLSPRQMSTLML-KTNHLSRSLNFN 505
LS TL+L KTN L RSL+ N
Sbjct: 495 IIRLLSTMPRLTLLLMKTNDLVRSLDEN 522
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -3
Query: 120 FRVESIKYYIVSINMFEKIKIKQVFFNHL 34
F +ES++++ + IN EKI +K +F+N L
Sbjct: 43 FFIESLQFHYL-INQSEKISLKLIFWNEL 70
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.9 bits (59), Expect = 1.7
Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 6/176 (3%)
Frame = +2
Query: 215 RQLSSLNAEWFLKMDFVKREEHNAEEENYKMYMDSLQKHQLESEYHTQISMEQLHQAMQS 394
++LSS E+ + D VK E + Y+ +DSL K +E E L +
Sbjct: 47 KELSSKTKEFRKQPDEVKLGEMKGLLKLYQSGIDSLTKRAKSAEATFFRVYETLGEVPDP 106
Query: 395 SLNNSGIVHNFQLPLSPRQMSTLMLKTNHLSRSLNFNETIHPQ----RDEIDLHQNLRHE 562
+N + + +Q+ L + + SL E + + R E+D +++L
Sbjct: 107 YPLLIEAANNLK---TQKQIEDLKKEKEEMEGSLQGKEKLEREVENLRKELDKYKDLVET 163
Query: 563 EALRNLDVTLFRNELELQNNLSQALVQNLSEQDLRNLD--LSRINEVQLQNLRTDI 724
EA + +T + E E Q L +++ +++ + S+I E+Q L D+
Sbjct: 164 EAEKRAAIT--KEECEKSWLEQQKLYKDMEQENASTIQKLTSKIRELQASQLDHDL 217
>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
reductase/acetylglutamate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 885
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +2
Query: 635 LVQNLSEQDLRNLDLSRINEVQLQNLRTDIPL----HHESNVSQGG 760
L ++++ ++LRNL R N L +++ D+PL H+ +VS GG
Sbjct: 794 LKKSITSRELRNLYQDRYNGEPLIHVQGDVPLVKDNAHKHHVSVGG 839
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 272 EEHNAEEENYKMYMDSLQKHQLESEYHTQISMEQLHQAMQSSLNNS 409
EE ++E K Y+ K ++E H Q+ +EQ + + +L S
Sbjct: 25 EEIVFDKEKRKEYLTGFHKRKVERRKHAQVQLEQQKREERLALRKS 70
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 27.1 bits (57), Expect = 2.9
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = -2
Query: 340 FQLMFLKTVHVHFVILFFGIMFFSFHKIH 254
F F VH+H+++ G+ F+ H
Sbjct: 403 FMFAFCSKVHIHYIVSLIGLTIFNIADYH 431
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 6.8
Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 3/169 (1%)
Frame = +2
Query: 221 LSSLNAEWFLKMDFVKREEHNAEEENYKMYMDSLQKHQLESEYH-TQISMEQLHQAMQSS 397
L L++E M+ +K + A+E K+ +D +L+ E ++ + E S
Sbjct: 1486 LQKLHSESLSLMENIKSQLQEAKE---KIQVDESTIQELDHEITASKNNYEGKLNDKDSI 1542
Query: 398 LNN-SGIVHNFQLPLSPRQMSTLMLKTNHLSRSLNFNETIHPQRDEIDLHQNLRHEEALR 574
+ + S + L+ + + L T S L FN + +++ H++ E R
Sbjct: 1543 IRDLSENIEQLNNLLAEEKSAVKRLSTEKESEILQFNSRLA----DLEYHKSQVESELGR 1598
Query: 575 N-LDVTLFRNELELQNNLSQALVQNLSEQDLRNLDLSRINEVQLQNLRT 718
+ L + EL+L N +L + + + DLS I + ++LRT
Sbjct: 1599 SKLKLASTTEELQLAENERLSLTTRMLDLQNQVKDLSNIKDSLSEDLRT 1647
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 25.4 bits (53), Expect = 9.0
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +2
Query: 434 PLSPRQMSTLMLKTNHLSRSLNFNE-TIHPQRDEIDLH-QNLR-HEEALRNLDVTLFRNE 604
P SP+ S LM + + LSR + +E ++ P + + + LR + LR+L++ +NE
Sbjct: 295 PASPKSDSALMDEDSDLSRRHSLSEQSLSPVSESYPQYAKTLRLTSDQLRSLNLKPGKNE 354
Query: 605 LELQNNLSQAL 637
L N +A+
Sbjct: 355 LSFGVNGGKAI 365
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Frame = +2
Query: 596 RNEL-ELQNNLSQALVQNLSEQ---DLRNLDLSRINEVQLQNLRTDIPLHHESNV 748
RNEL + NN+ + L ++L + +NL+L+ +N ++ ++ +P ++SN+
Sbjct: 553 RNELLDDYNNVQKILNESLEASVHLNTKNLELADLNNNLVKQIQHRVPPENQSNL 607
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,504
Number of Sequences: 5004
Number of extensions: 61007
Number of successful extensions: 183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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