Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22l18
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 27 3.9
SPAC23A1.03 |apt1||adenine phosphoribosyltransferase |Schizosacc... 27 3.9
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 5.1
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 26 5.1
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.1
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.8
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom... 26 6.8
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 25 9.0
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 9.0
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 25 9.0
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 480 YTIDHSK--CKQYFKISQCEYTLGRYAHIK 563
Y++DH+ CKQY + + Y LGR + K
Sbjct: 642 YSLDHAAQICKQYNYLDELVYILGRMGNNK 671
>SPAC23A1.03 |apt1||adenine phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = -1
Query: 452 PGTILVITISEKLHVNSDGLRKGSLSYARKTLTVELFLIT-KASVNSSELKSPNAAIIPS 276
PG ++V++ +++ +S ++KG++ ++ L V+ L T ++ + EL + +
Sbjct: 92 PGDLVVVSYNKEYSTDSFAIQKGTIKPGQRVLIVDDILATGGTALAADELVTRLGGELVG 151
Query: 275 EYFPNELLVISLTKELV 225
F EL + K L+
Sbjct: 152 HLFLLELTFLQGRKRLM 168
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 301 DFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPSEF 408
DF +L AF++ + FLAY + FL+ F
Sbjct: 1141 DFMQSQLIPAFLVTTDTKAQGFLAYALQEFLKLGGF 1176
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 286 IAAFGDFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPSEFTCN 417
+ +F F+S F +N+ N+F + P LR S CN
Sbjct: 20 VPSFPPFHSSVANIHFTKENNLKSNIFEHNNNSPTLRSSSVACN 63
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = -1
Query: 755 LDFFV*FSSPIGSSLGLLRDWS---KIQNTRLPSTLIPNKSKI 636
LD+ V SS + SS+G+ +S K+ + ++PST+ P+ S I
Sbjct: 3651 LDYSV-SSSSLSSSIGVGSSFSSNSKVTSNKVPSTVSPHSSSI 3692
>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 728 PIGSSLGLLRDWSKIQNTR 672
P GS LLRDW KI+ R
Sbjct: 261 PHGSFFELLRDWKKIEEFR 279
>SPCC970.04c |mob2||protein kinase activator
Mob2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 298 GDFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPSEFTCNFSDIV 432
G F+ T V S +V Y ++PF+R NFS IV
Sbjct: 30 GSFSKKSSTSQLVRTGSPSVEPTALYLQQPFVRTHLVKGNFSTIV 74
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +1
Query: 679 FWIFDQSRNKPKEEPMGDENYTKKSNNL 762
FW+ Q P +G NYT +S L
Sbjct: 451 FWLSTQHHKHPFLTTIGSSNYTSRSQQL 478
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 364 FLAYDKEPFLRPSEFTCNFSDIVITS 441
FLAYD+ P L E +F D+ S
Sbjct: 338 FLAYDRSPSLTNQEAESSFQDVASIS 363
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 350 ELFLITKASVNSSELKSPNAAIIPSEYFPNELLVIS-LTKELVDKITLNNK 201
E F+ K S + + + +YF ++ L+ S L++ELVDKI L K
Sbjct: 394 EFFVKEKNGSESHDHQGQGDVVWKGKYFLDKELIPSFLSEELVDKIFLIGK 444
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,264,347
Number of Sequences: 5004
Number of extensions: 70235
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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