Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22l10
(159 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa... 53 4e-09
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 0.77
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 1.0
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 25 1.8
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 23 4.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 23 4.1
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 23 4.1
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 23 7.2
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 23 7.2
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 23 7.2
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch... 22 9.5
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 22 9.5
>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
L22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 53.2 bits (122), Expect = 4e-09
Identities = 24/48 (50%), Positives = 32/48 (66%)
Frame = +1
Query: 16 KINLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVA 159
K++ K+ ID T D I DV FEKYL + +KV+GKT NL + VVV+
Sbjct: 7 KVSNKYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVS 54
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 0.77
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 28 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 138
K DC + + ++ + N +K + +HV E K + L
Sbjct: 819 KLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSEL 855
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 25.4 bits (53), Expect = 1.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 73 DVGNFEKYLKEHVKVEGKTNNLSNH 147
+ GN +KY + ++KV GK ++ H
Sbjct: 955 EAGNLKKYDQPNLKVSGKNDSFVTH 979
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 10 KRKINLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHV 150
K ++ K ++D H + L N + +KE KV+G+ + L +
Sbjct: 147 KEDLHKKLSVDNAHLIKQLDLLSSNMKTLMKEKTKVQGQRDLLEQRL 193
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = +1
Query: 10 KRKINLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLS 141
K + + ++ T PAE + Y EH +++ + N LS
Sbjct: 135 KSDMEIANSLKITQPAEKNSGTANPISAYSLEHAELDERNNQLS 178
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 49 HPAEDSILDVGNFEKYLKEHVKVEGK 126
H A D + V + ++ L++H K EGK
Sbjct: 90 HKASDIVDAVSSKDEELRKHAKGEGK 115
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -2
Query: 116 TLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRLM 6
TL + +FS++ ++++ + A ++VNF L L+
Sbjct: 3586 TLPLNIIFFSEVQSNELENKASKFMNVVNFTLSISLL 3622
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/46 (23%), Positives = 20/46 (43%)
Frame = +1
Query: 1 KGIKRKINLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 138
+ I K +L + +P S+ D+G + +EH + NL
Sbjct: 359 RAIVNKYSLGNNVSTVNPFSKSLYDIGLHAETDREHTMISEFLTNL 404
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 100 KEHVKVEGKTNNLSNH 147
+EH EG TN++SN+
Sbjct: 1937 REHGSEEGNTNSISNN 1952
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 122 PSTLTCSFKYFSKLPTSKIL 63
PSTLTCS S + T K L
Sbjct: 7 PSTLTCSKWIHSIIKTKKFL 26
>SPBC19F8.06c |meu22||amino acid permease, unknown
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 119 STLTCSFKYFSKLPTSK 69
ST+TC K + LPT K
Sbjct: 24 STITCDGKSLNTLPTPK 40
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 22.2 bits (45), Expect = 9.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 37 IDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLS 141
ID ++ ++ NF+ L+ V V T NLS
Sbjct: 196 IDALKRVDEIVVPQNNFQSALEHAVPVSLDTQNLS 230
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.135 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 518,148
Number of Sequences: 5004
Number of extensions: 6593
Number of successful extensions: 23
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 33
effective length of database: 2,197,346
effective search space used: 41749574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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