Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22l10
(159 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1662 + 28447419-28447666,28448429-28448573 52 6e-08
03_02_0963 - 12769715-12769859,12770639-12770889 49 4e-07
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235... 27 2.7
06_01_0971 + 7498971-7499477,7499578-7499715,7500653-7500732,750... 26 3.6
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 25 8.3
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 25 8.3
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574... 25 8.3
01_06_1699 - 39269477-39269574,39269690-39269929,39270029-392700... 25 8.3
>07_03_1662 + 28447419-28447666,28448429-28448573
Length = 130
Score = 52.0 bits (119), Expect = 6e-08
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = +1
Query: 4 GIKRKINLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNLSNHVVV 156
G K+K ++ F IDC+ P ED I+++ + EK+L+E +KV GK NL + V V
Sbjct: 14 GGKKKGSVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTV 65
>03_02_0963 - 12769715-12769859,12770639-12770889
Length = 131
Score = 49.2 bits (112), Expect = 4e-07
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +1
Query: 10 KRKINLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNLSNHVVVA 159
K+K ++ F IDC P +D I+++ + EK+L+E +KV GK NL V V+
Sbjct: 17 KKKGSVTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVS 67
>03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,
2353031-2353708,2353800-2353964,2354139-2354433,
2354581-2354795,2354885-2355190,2355269-2355332,
2355426-2355665,2355783-2355886
Length = 1505
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = -2
Query: 137 RLFVLPSTLTCSFK----YFSKLPTSKILSSAGCVQSIVNFKLIFRL 9
+LFV L C F+ +F P+ +IL+ QS+V+ + FRL
Sbjct: 1015 KLFV--KMLRCVFRAPMSFFDTTPSGRILNRVSVDQSVVDLDIAFRL 1059
>06_01_0971 +
7498971-7499477,7499578-7499715,7500653-7500732,
7501175-7501584,7503650-7503834,7504280-7504365,
7504641-7504774,7506491-7506790,7506999-7507147,
7507762-7507845
Length = 690
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 137 RLFVLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVN 30
RL LP TC KY KL + S GC+ S N
Sbjct: 206 RLMWLP---TCERKYMVKLELALFYLSQGCIDSAYN 238
>12_01_1080 +
11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 4 GIKRKINLKFTIDCTHPAEDSILDVGNFE 90
G +R ++ +D HPA D G+FE
Sbjct: 67 GARRSLSAAMDVDVGHPATAVATDEGDFE 95
>12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 7 IKRKINLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVV 153
+K + ++ +D +P E+ +LD E + +EGKT NL +
Sbjct: 1493 LKGALFSRYVLDSKNP-ENVLLDQNFIEDMRAMPIYIEGKTKNLLERAI 1540
>09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,
5748588-5748714,5748800-5749119,5749202-5749963,
5750749-5750898,5751007-5751096,5751196-5751340,
5751440-5751617,5751753-5752448,5752555-5752753
Length = 1524
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 7 IKRKINLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVV 153
+K + ++ +D +P E+ +LD E + +EGKT NL +
Sbjct: 1390 LKGALFSRYVLDSKNP-ENVLLDQNFIEDMRAMPIYIEGKTKNLLERAI 1437
>01_06_1699 - 39269477-39269574,39269690-39269929,39270029-39270092,
39270251-39270771,39271032-39271326,39271400-39271564,
39271650-39272237,39272617-39272703,39272982-39274429,
39274515-39275015,39275574-39275678,39276095-39276143
Length = 1386
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 119 STLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 9
S +F P+S+IL+ A QS V+ + +RL
Sbjct: 906 SIFRAPINFFDSTPSSRILNRASTDQSTVDTDIPYRL 942
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.135 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,222,949
Number of Sequences: 37544
Number of extensions: 38363
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 14,793,348
effective HSP length: 33
effective length of database: 13,554,396
effective search space used: 257533524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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