Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22l10
         (159 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal prote...    53   2e-08
U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal prote...    33   0.027
Z81507-2|CAB04135.1|  388|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U28993-6|AAK31498.2|  639|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF316599-1|AAG38591.1|  639|Caenorhabditis elegans paracaspase p...    25   7.2  
Z81585-2|CAB04682.2|  303|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U53180-5|AAA96287.3|  295|Caenorhabditis elegans Hypothetical pr...    25   9.6  
AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    25   9.6  
AC024859-4|AAK29983.4|  472|Caenorhabditis elegans Hypothetical ...    25   9.6  

>U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform a protein.
          Length = 130

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
 Frame = +1

Query: 10  KRKINLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL-SNHVVV 156
           K+K++LKF ++C +P ED IL + + E +L E +KV GKT +L +N+V V
Sbjct: 16  KKKVHLKFNVECKNPVEDGILRIEDLEAFLNEKIKVNGKTGHLAANNVKV 65


>U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal
          protein, large subunitprotein 22, isoform b protein.
          Length = 53

 Score = 33.1 bits (72), Expect = 0.027
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +1

Query: 10 KRKINLKFTIDCTHPAEDSILDV 78
          K+K++LKF ++C +P ED IL +
Sbjct: 16 KKKVHLKFNVECKNPVEDGILRI 38


>Z81507-2|CAB04135.1|  388|Caenorhabditis elegans Hypothetical
           protein F18A11.2 protein.
          Length = 388

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 1   KGIKRKINLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVV 156
           K +KR +N++ TID    +  + L+     KY+   + V G+ +   N V++
Sbjct: 48  KALKRHLNIRKTIDLNSYSSKTELEEDELNKYVP--IDVIGQNHQDDNKVLM 97


>U28993-6|AAK31498.2|  639|Caenorhabditis elegans Hypothetical
           protein F22D3.6 protein.
          Length = 639

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 79  GNFEKYLKEHVKVEGKTNNLSNHVVV 156
           G F KYLK HV++E    ++ N V++
Sbjct: 424 GVFMKYLKNHVQLEISVIDMLNKVLL 449


>AF316599-1|AAG38591.1|  639|Caenorhabditis elegans paracaspase
           protein.
          Length = 639

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 79  GNFEKYLKEHVKVEGKTNNLSNHVVV 156
           G F KYLK HV++E    ++ N V++
Sbjct: 424 GVFMKYLKNHVQLEISVIDMLNKVLL 449


>Z81585-2|CAB04682.2|  303|Caenorhabditis elegans Hypothetical
           protein T05E12.2 protein.
          Length = 303

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -1

Query: 132 ICFALNFDVFLQVFLE 85
           IC  LN DVFL VF E
Sbjct: 139 ICIGLNEDVFLFVFCE 154


>U53180-5|AAA96287.3|  295|Caenorhabditis elegans Hypothetical
           protein D1014.3 protein.
          Length = 295

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 13  RKINLKFTIDCTHPAEDSILDVGNFEKYLKEHVKV 117
           RKI  +  + C     +   D+G F    K HV +
Sbjct: 92  RKIQPERAVQCLEKTSEIYTDMGRFTMAAKNHVSI 126


>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 52  PAEDSILDVGNFEKYLKEHVKVEGKTNNL 138
           P   SI D+G+ +KY K+H   E   NN+
Sbjct: 831 PKTISIRDIGSQKKYQKDH---ENNNNNI 856


>AC024859-4|AAK29983.4|  472|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.11 protein.
          Length = 472

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 4   GIKRKINLKFTIDCTHPAEDSILDVG 81
           GI   IN+KF ++C   +    LD G
Sbjct: 151 GIDLPINIKFVLECMEESSSEGLDKG 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.135    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,663
Number of Sequences: 27780
Number of extensions: 36831
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 12,740,198
effective HSP length: 33
effective length of database: 11,823,458
effective search space used: 224645702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)