Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22l10
         (159 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   3.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    19   7.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    18   9.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              18   9.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 86  KLPTSKILSSAGCVQSIVNFKL 21
           K+P++K+L+    V+S +   L
Sbjct: 821 KVPSTKVLAMISSVKSFMELSL 842


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -2

Query: 140 LRLFVLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVNFKL 21
           LR++     +    K   KL +      AGC   I  FKL
Sbjct: 408 LRMYPPVPLIAREIKTDLKLASGDYTIPAGCTVVIGTFKL 447


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 46   THPAEDSILDVGNFEKYLKEHVKVEGKT 129
            T+ A  SIL   N ++   +   + GKT
Sbjct: 992  TNQAGKSILQTANIKQQSPQQHVLPGKT 1019


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 86  KLPTSKILSSAGCVQSIVNFKLIF 15
           K   S  LSS  CV   V F +++
Sbjct: 684 KYTRSADLSSYNCVPINVQFSVLY 707


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.135    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,777
Number of Sequences: 438
Number of extensions: 353
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 32
effective length of database: 132,327
effective search space used:  2646540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.8 bits)