Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22l01
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    29   0.96 
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    28   1.7  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   5.1  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    26   6.7  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   6.7  
SPAC29B12.03 |spd1||ribonucleotide reductase |Schizosaccharomyce...    25   8.9  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 499 PISTGCIPPFRGCPTDSMARPNSCLQLIC*QKFMQ-QKWFGFDETQFEILAAF 344
           P+S   IPP     TD ++  N    LIC    +Q    F FD  Q E L +F
Sbjct: 268 PLSPSIIPPLVSAITDRLSFDNIKPALICVGHLLQFCSSFEFDHEQLEKLESF 320


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = +2

Query: 143 WCVYILR----QDNGKLYTGITSNLNRRIKQHSNK 235
           +C Y+L+    Q +G +Y G T +  RR++QH+ +
Sbjct: 7   YCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGE 41


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 439 DVPYYRLGNHEKVEYIPLKLALNDDITSEPQQFSEPV 549
           ++PY    NHE++  IPL+   N +I   P Q   P+
Sbjct: 390 NIPYSPNSNHEEINSIPLR---NKNIFVPPSQGHSPL 423


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 439 DVPYYRLGNHEKVEYIPLKLALNDDITSEPQQFSEPVYK 555
           ++PY     H  +E   L L+L      EP+ F  P YK
Sbjct: 760 EIPYLDPLEHMHIESSTLSLSLRKLEILEPKLFDSPYYK 798


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 261  ALRKHLAPCLFECCFMRLLRLLVMPV 184
            +L +H  PC+ + CF + LR  ++ +
Sbjct: 1298 SLMQHFLPCILDSCFSKNLRYSMLGI 1323


>SPAC29B12.03 |spd1||ribonucleotide reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 487 PLKLAL-NDDITSEPQQFSEPVYKMPIDDMMVGYN 588
           P + A+ N +  + PQ F EP +  P D +M G N
Sbjct: 87  PFEQAIPNYNWANPPQDFEEPEWLKPFDVVMEGTN 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,823
Number of Sequences: 5004
Number of extensions: 49794
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)