Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22k22
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329...    31   0.50 
02_01_0372 + 2668597-2668671,2669021-2669126,2669279-2669334,266...    29   2.0  
01_06_1224 - 35508842-35510404                                         28   6.2  

>02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,
            3299528-3299531,3299814-3299949,3300034-3300090,
            3301689-3301786,3301876-3301947,3302056-3302228,
            3302552-3302698,3303113-3303336,3305300-3305306,
            3305634-3305800,3306033-3306068,3306787-3307004,
            3307115-3307172,3307761-3307842,3308045-3308207,
            3308594-3308598,3308700-3308885,3308969-3309548,
            3309642-3309774,3309880-3309948,3310184-3310395,
            3310654-3310891,3311228-3311386,3311501-3311926,
            3312010-3312447,3312593-3312712,3312784-3313266,
            3313471-3314009,3314178-3314667,3314836-3314904,
            3315735-3315839,3315940-3316158,3316254-3316508,
            3316602-3316651,3317175-3317284,3317372-3317454,
            3317560-3317772,3317870-3318040
          Length = 2391

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = +3

Query: 168  YTKYAQLIXASTTYARRMKRLSNRIFGEVALPXNSKSMKVVKIFSARPLHTNEEIIXY 341
            ++ + QL  A+T Y   +   S ++F  VALP  S+S    KI SAR  H N  +I +
Sbjct: 1149 FSNWVQL--ATTPYGTALD--SAKMFLPVALPRGSRSRAAAKIKSARLEHENTRMISF 1202


>02_01_0372 +
           2668597-2668671,2669021-2669126,2669279-2669334,
           2669830-2669907,2669993-2670066,2670147-2670280,
           2670377-2670472,2670703-2670854
          Length = 256

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 318 TNEEIIXYYPRXMETHKL---MMNLRDYGLFRDEHQDFKEEMKRLREL 452
           TNE +I      +E HK    M+N R   +  D HQ +K E++ L+++
Sbjct: 138 TNEAVIKQLNLELEAHKAHIDMLNSRLEQVTADVHQQYKNEIQDLKDV 185


>01_06_1224 - 35508842-35510404
          Length = 520

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 399 FRDEHQDFKEEMKRLRELRGKVKVWRRLLD 488
           FR +    +   +RL E  G +  WRRLLD
Sbjct: 282 FRQQFHHLRPISRRLGEAHGLLSSWRRLLD 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,335,369
Number of Sequences: 37544
Number of extensions: 162730
Number of successful extensions: 297
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)