Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22k22
         (578 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC015462-1|AAH15462.1|  106|Homo sapiens mitochondrial ribosomal...   103   6e-22
AF151897-1|AAD34134.1|  106|Homo sapiens CGI-139 protein protein.     103   6e-22
AC006006-2|AAD43190.1|  106|Homo sapiens unknown protein.             103   6e-22
BC105793-1|AAI05794.1|  112|Homo sapiens MRPS33 protein protein.      101   2e-21

>BC015462-1|AAH15462.1|  106|Homo sapiens mitochondrial ribosomal
           protein S33 protein.
          Length = 106

 Score =  103 bits (246), Expect = 6e-22
 Identities = 51/87 (58%), Positives = 60/87 (68%)
 Frame = +3

Query: 207 YARRMKRLSNRIFGEVALPXNSKSMKVVKIFSARPLHTNEEIIXYYPRXMETHKLMMNLR 386
           YA RM RLS R+FGEV  P NSKSMKVVK+FS  PL   +E   +YP      +LM  LR
Sbjct: 7   YAFRMSRLSARLFGEVTRPTNSKSMKVVKLFSELPLAKKKETYDWYPNHHTYAELMQTLR 66

Query: 387 DYGLFRDEHQDFKEEMKRLRELRGKVK 467
             GL+RDEHQDF +E KRL++LRGK K
Sbjct: 67  FLGLYRDEHQDFMDEQKRLKKLRGKEK 93


>AF151897-1|AAD34134.1|  106|Homo sapiens CGI-139 protein protein.
          Length = 106

 Score =  103 bits (246), Expect = 6e-22
 Identities = 51/87 (58%), Positives = 60/87 (68%)
 Frame = +3

Query: 207 YARRMKRLSNRIFGEVALPXNSKSMKVVKIFSARPLHTNEEIIXYYPRXMETHKLMMNLR 386
           YA RM RLS R+FGEV  P NSKSMKVVK+FS  PL   +E   +YP      +LM  LR
Sbjct: 7   YAFRMSRLSARLFGEVTRPTNSKSMKVVKLFSELPLAKKKETYDWYPNHHTYAELMQTLR 66

Query: 387 DYGLFRDEHQDFKEEMKRLRELRGKVK 467
             GL+RDEHQDF +E KRL++LRGK K
Sbjct: 67  FLGLYRDEHQDFMDEQKRLKKLRGKEK 93


>AC006006-2|AAD43190.1|  106|Homo sapiens unknown protein.
          Length = 106

 Score =  103 bits (246), Expect = 6e-22
 Identities = 51/87 (58%), Positives = 60/87 (68%)
 Frame = +3

Query: 207 YARRMKRLSNRIFGEVALPXNSKSMKVVKIFSARPLHTNEEIIXYYPRXMETHKLMMNLR 386
           YA RM RLS R+FGEV  P NSKSMKVVK+FS  PL   +E   +YP      +LM  LR
Sbjct: 7   YAFRMSRLSARLFGEVTRPTNSKSMKVVKLFSELPLAKKKETYDWYPNHHTYAELMQTLR 66

Query: 387 DYGLFRDEHQDFKEEMKRLRELRGKVK 467
             GL+RDEHQDF +E KRL++LRGK K
Sbjct: 67  FLGLYRDEHQDFMDEQKRLKKLRGKEK 93


>BC105793-1|AAI05794.1|  112|Homo sapiens MRPS33 protein protein.
          Length = 112

 Score =  101 bits (242), Expect = 2e-21
 Identities = 50/87 (57%), Positives = 60/87 (68%)
 Frame = +3

Query: 207 YARRMKRLSNRIFGEVALPXNSKSMKVVKIFSARPLHTNEEIIXYYPRXMETHKLMMNLR 386
           YA RM RLS R+FGEV  P NSKSMKVVK+FS  PL   +E   +YP      +LM  LR
Sbjct: 7   YAFRMSRLSARLFGEVTRPTNSKSMKVVKLFSELPLAKKKETYDWYPNHHTYAELMQTLR 66

Query: 387 DYGLFRDEHQDFKEEMKRLRELRGKVK 467
             GL+RDEHQDF +E KRL++LRG+ K
Sbjct: 67  FLGLYRDEHQDFMDEQKRLKKLRGEEK 93


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,548,329
Number of Sequences: 237096
Number of extensions: 890450
Number of successful extensions: 1600
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1594
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5985693436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)