Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22k22
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54271-7|CAA91037.1|  126|Caenorhabditis elegans Hypothetical pr...    84   6e-17
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    29   1.8  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    29   1.8  
U80029-18|AAB37597.2|  330|Caenorhabditis elegans Serpentine rec...    27   9.6  

>Z54271-7|CAA91037.1|  126|Caenorhabditis elegans Hypothetical
           protein F21D5.8 protein.
          Length = 126

 Score = 84.2 bits (199), Expect = 6e-17
 Identities = 41/93 (44%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
 Frame = +3

Query: 189 IXASTTYARRMKRLSNRIFGEVALPXNSKSMKVVKIFSARPLHTNEEII-XYYPRXMETH 365
           I   T + +RM RLSNR++GEV +P ++KS+KVV++ SA P  T E++   YYP     H
Sbjct: 17  ISQPTPFGKRMDRLSNRVWGEVVMPTDTKSLKVVRVMSAEPYETKEQLSPKYYPNLPMFH 76

Query: 366 KLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKV 464
            L   LR +GLF D+H  F++    L+ +RGKV
Sbjct: 77  YLTKMLRFHGLFFDDHVVFRDVQDNLKIIRGKV 109


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
           protein 68 protein.
          Length = 5079

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +3

Query: 282 KVVKIFSARPLHTNEEIIXYYPRXMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGK 461
           K +K   A  L  N+          E  KLM +L +Y    ++ QDF+E+   LR LR +
Sbjct: 301 KFLKGIDALQLEGNQSTDWTRVDLNEVLKLMEDLIEYFAQPNDEQDFEEKQNHLRALRSR 360


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
           protein.
          Length = 5071

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +3

Query: 282 KVVKIFSARPLHTNEEIIXYYPRXMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGK 461
           K +K   A  L  N+          E  KLM +L +Y    ++ QDF+E+   LR LR +
Sbjct: 422 KFLKGIDALQLEGNQSTDWTRVDLNEVLKLMEDLIEYFAQPNDEQDFEEKQNHLRALRSR 481


>U80029-18|AAB37597.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 20 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 216 RMKRLSNRIFGEVALPXNSKSMKVVKIFS 302
           R KRL++ +    +L  N KSM+ +K+F+
Sbjct: 217 RSKRLTSTLSNRYSLQQNMKSMETLKVFA 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,158,382
Number of Sequences: 27780
Number of extensions: 147570
Number of successful extensions: 318
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)