Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22k19
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p...   128   9e-31
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    29   0.99 
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    27   4.0  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   5.3  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    26   5.3  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.3  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   7.0  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   7.0  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    26   7.0  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   9.2  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   9.2  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    25   9.2  

>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 216

 Score =  128 bits (309), Expect = 9e-31
 Identities = 74/217 (34%), Positives = 121/217 (55%), Gaps = 1/217 (0%)
 Frame = +2

Query: 77  NIFLNKI-MSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTKALDI 253
           +IF   I ++A   +L +RSL+T+ ASA    PPVQ++GL+G YAS+L++AA K   LD 
Sbjct: 3   HIFRRSIPITARLPSLGIRSLATATASAH---PPVQLYGLDGSYASSLYTAAVKESKLDN 59

Query: 254 VEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENG 433
           VEK L +    ++   + +++I +P + R  K   +  +       P   N   +L +N 
Sbjct: 60  VEKALNKLSGVLQQRPEFEQYISSPWLTREDKKILVSSLTQMTGNEPLLKNFYNVLLDNH 119

Query: 434 RLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAK 613
           RL  L  +   F  +M A RGE+  ++ +A PLD      LE+ + K   G   + ++ K
Sbjct: 120 RLYLLTRIQKQFSTLMRAKRGEIEVKITSATPLDSKILSRLESRIAKSKYGKGKLLVSNK 179

Query: 614 VDPSLIGGMVVSIGDKYVDMSVASKVKKYTELISAAV 724
           V PS+IGG++V IGD  +D+SV S++    +L+S  +
Sbjct: 180 VTPSIIGGLIVEIGDNILDVSVGSRLNNLNKLLSEPI 216


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 529 WFGCNNFTSYFTPVRSHHNLKSINDSLQFPQATI 428
           W G  +F + F  + +H  + S+N  L F QA I
Sbjct: 261 WLGPEHFLNEFFTLNTHQKVSSLNYHLAFQQARI 294


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 17  LARNIWSIKPKV*KILLTCANIFLNKIMSALKGNLLVRSLSTSVASAQM 163
           ++R +WSI  K  K +   +N+  ++   AL  NLL    S    SA++
Sbjct: 737 VSRGLWSIDSKESKNMHISSNVVASEAPDALAANLLAMYESNPKKSAKV 785


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 366  CFNASTFMLLFIVGLMMNSLSF-ASVLID 283
            C     F+LL   GL+MN L+F ASV+++
Sbjct: 1296 CITRVYFLLLKACGLIMNGLNFEASVMLE 1324


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 471 LKALMTASSFPKRPFSASNPSRLPVVG 391
           L   +T  + P++PFS S+P+  P +G
Sbjct: 233 LNQALTLINLPEQPFSISSPTATPQLG 259


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 432 PFSASNPSRLPVVGERLILLATCFNASTFML 340
           PFS    S+LPV G   ILL   F  +T+++
Sbjct: 3   PFSFDPSSKLPVTGIYNILLFNLFPLATYLV 33


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +2

Query: 185 FGLEGRYASALFSAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIK 337
           +G E       +  A   K+ D ++KEL    +S+K+ A+    I++  I+
Sbjct: 602 YGEEDPDVIVCYIGADDGKSPDQIQKELADLAESVKSSAEASAKIVSEIIQ 652


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 414 PSRLPVVGERLILLATCFNASTFMLLFIVGLMMNSLSFASV 292
           P + P      ++   CF A  F+++FI  +    LSF +V
Sbjct: 188 PLKRPNTSISNVIWLICFGAPLFLVIFICYIFFTVLSFFNV 228


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +2

Query: 353 DALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEVAC 508
           +AL    N+I  + T  + LGL+    RL  +         +MA H G + C
Sbjct: 5   EALHVGCNRIPTAATWSSNLGLIYGAERLIAVADPFKEINYLMAGHSGRINC 56


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 723 TAALISSVYFLTLLATLMST 664
           TA   SS+Y+  LLATL+ST
Sbjct: 303 TAVGTSSIYYSFLLATLLST 322


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 193 QSKYLHWRFYHLC*CDTCAQR 131
           + K LHWRF     CD C  +
Sbjct: 555 ECKSLHWRFSDRSNCDECGHK 575


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 474 ILKALMTASSFPKRPFSASNPSRLPVVGERL 382
           + + L  +SS P RPFS  NP+   V  + L
Sbjct: 47  LTEILNDSSSLPARPFSLPNPNNSTVEKQSL 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,235,965
Number of Sequences: 5004
Number of extensions: 68363
Number of successful extensions: 204
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)